The LRRK2 Gly2385Arg variant is associated with Parkinson's disease: Genetic and functional evidence

E. K. Tan, Y. Zhao, L. Skipper, M. G. Tan, A. Di Fonzo, L. Sun, S. Fook-Chong, S. Tang, E. Chua, Y. Yuen, L. Tan, R. Pavanni, M. C. Wong, Prasanna Kolatkar, C. S. Lu, V. Bonifati, J. J. Liu

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Abstract

Evidence of LRRK2 haplotypes associated with Parkinson's disease (PD) risk was recently found in the Chinese population from Singapore, and a common LRRK2 missense variant, Gly2385Arg, was independently detected as a putative risk factor for PD in the Chinese population from Taiwan. To test the association between the Gly2385Arg variant in a large case-control sample of Chinese ethnicity from Singapore, and to perform functional studies of the wild type and Gly2385Arg LRRK2 protein in human cell lines. In a case-control study involving 989 Chinese subjects, the frequency of the heterozygous Gly2385Arg genotype was higher in PD compared to controls (7.3 vs. 3.6%, odds ratio = 2.1, 95% CI: 1.1-3.9, P = 0.014); these values yield an estimated population attributable risk (PAR) of ∼4%. In a multivariate logistic regression analysis with the disease group (PD vs. controls) as the dependent variable and the genotype as an independent factor with adjustments made for the effect of age and gender, the heterozygous Gly2385Arg genotype remained associated with an increased risk of PD compared to wild type genotype (odds ratio = 2.67, 95% CI: 1.43-4.99, P = 0.002). The glycine at position 2385 is a candidate site for N-myristoylation, and the Gly2385Arg variant replaces the hydrophobic glycine with the hydrophilic arginine, and increases the net positive charge of the LRRK2 WD40 domain. In transfection studies, we demonstrated that both the wild type and Gly2385Arg variant LRRK2 protein localize to the cytoplasm and form aggregates. However, under condition of oxidative stress, the Gly2385Arg variant was more toxic and associated with a higher rate of apoptosis. Our study lends support to the contention that the Gly2385Arg is a common risk factor for PD in the Chinese population. Our bioinformatics and in-vitro studies also suggest that the Gly2385Arg variant is biologically relevant and it might act through pro-apoptotic mechanisms.

Original languageEnglish
Pages (from-to)857-863
Number of pages7
JournalHuman Genetics
Volume120
Issue number6
DOIs
Publication statusPublished - 1 Jan 2007
Externally publishedYes

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Parkinson Disease
Genotype
Singapore
Glycine
Population
Odds Ratio
Poisons
Computational Biology
Taiwan
Haplotypes
Transfection
Arginine
Case-Control Studies
Cytoplasm
Oxidative Stress
Logistic Models
Regression Analysis
Apoptosis
Cell Line

ASJC Scopus subject areas

  • Genetics(clinical)
  • Genetics

Cite this

Tan, E. K., Zhao, Y., Skipper, L., Tan, M. G., Di Fonzo, A., Sun, L., ... Liu, J. J. (2007). The LRRK2 Gly2385Arg variant is associated with Parkinson's disease: Genetic and functional evidence. Human Genetics, 120(6), 857-863. https://doi.org/10.1007/s00439-006-0268-0

The LRRK2 Gly2385Arg variant is associated with Parkinson's disease : Genetic and functional evidence. / Tan, E. K.; Zhao, Y.; Skipper, L.; Tan, M. G.; Di Fonzo, A.; Sun, L.; Fook-Chong, S.; Tang, S.; Chua, E.; Yuen, Y.; Tan, L.; Pavanni, R.; Wong, M. C.; Kolatkar, Prasanna; Lu, C. S.; Bonifati, V.; Liu, J. J.

In: Human Genetics, Vol. 120, No. 6, 01.01.2007, p. 857-863.

Research output: Contribution to journalArticle

Tan, EK, Zhao, Y, Skipper, L, Tan, MG, Di Fonzo, A, Sun, L, Fook-Chong, S, Tang, S, Chua, E, Yuen, Y, Tan, L, Pavanni, R, Wong, MC, Kolatkar, P, Lu, CS, Bonifati, V & Liu, JJ 2007, 'The LRRK2 Gly2385Arg variant is associated with Parkinson's disease: Genetic and functional evidence', Human Genetics, vol. 120, no. 6, pp. 857-863. https://doi.org/10.1007/s00439-006-0268-0
Tan, E. K. ; Zhao, Y. ; Skipper, L. ; Tan, M. G. ; Di Fonzo, A. ; Sun, L. ; Fook-Chong, S. ; Tang, S. ; Chua, E. ; Yuen, Y. ; Tan, L. ; Pavanni, R. ; Wong, M. C. ; Kolatkar, Prasanna ; Lu, C. S. ; Bonifati, V. ; Liu, J. J. / The LRRK2 Gly2385Arg variant is associated with Parkinson's disease : Genetic and functional evidence. In: Human Genetics. 2007 ; Vol. 120, No. 6. pp. 857-863.
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AU - Di Fonzo, A.

AU - Sun, L.

AU - Fook-Chong, S.

AU - Tang, S.

AU - Chua, E.

AU - Yuen, Y.

AU - Tan, L.

AU - Pavanni, R.

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