Supersonic mib

Bilal Wajid, Ali Riza Ekti, Amina Noor, Erchin Serpedin, Muhammad Naeem Ayyaz, Hazem Nounou, Mohamed Nounou

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Abstract

A novel assembly pipeline, MiB, employs Minimum Description Length (MDL), de-Bruijn graphs and Bayesian estimation for reference assisted assembly of the novel genome. In a previous study MiB assembly was compared with nine other assembly algorithms showing significant improvement in results coupled with very large execution times. This correspondence introduces 'Supersonic MiB', an extension to our previous study MiB. Supersonic MiB aims to stimulate the assembly pipeline of MiB showing significant improvement in execution time compared to its predecessor.

Original languageEnglish
Title of host publication2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings
Pages86-87
Number of pages2
DOIs
Publication statusPublished - 2013
Event2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Houston, TX, United States
Duration: 17 Nov 201319 Nov 2013

Other

Other2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013
CountryUnited States
CityHouston, TX
Period17/11/1319/11/13

Fingerprint

Genome
Pipelines
Genes

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology (miscellaneous)
  • Computational Theory and Mathematics
  • Signal Processing
  • Biomedical Engineering

Cite this

Wajid, B., Ekti, A. R., Noor, A., Serpedin, E., Naeem Ayyaz, M., Nounou, H., & Nounou, M. (2013). Supersonic mib. In 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings (pp. 86-87). [6735941] https://doi.org/10.1109/GENSIPS.2013.6735941

Supersonic mib. / Wajid, Bilal; Ekti, Ali Riza; Noor, Amina; Serpedin, Erchin; Naeem Ayyaz, Muhammad; Nounou, Hazem; Nounou, Mohamed.

2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings. 2013. p. 86-87 6735941.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Wajid, B, Ekti, AR, Noor, A, Serpedin, E, Naeem Ayyaz, M, Nounou, H & Nounou, M 2013, Supersonic mib. in 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings., 6735941, pp. 86-87, 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013, Houston, TX, United States, 17/11/13. https://doi.org/10.1109/GENSIPS.2013.6735941
Wajid B, Ekti AR, Noor A, Serpedin E, Naeem Ayyaz M, Nounou H et al. Supersonic mib. In 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings. 2013. p. 86-87. 6735941 https://doi.org/10.1109/GENSIPS.2013.6735941
Wajid, Bilal ; Ekti, Ali Riza ; Noor, Amina ; Serpedin, Erchin ; Naeem Ayyaz, Muhammad ; Nounou, Hazem ; Nounou, Mohamed. / Supersonic mib. 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings. 2013. pp. 86-87
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