Sex-specific findings from a genome-wide linkage analysis of human fatness in non-Hispanic whites and African Americans: The HyperGEN Study

C. E. Lewis, K. E. North, D. Arnett, I. B. Borecki, H. Coon, R. C. Ellison, Steven Hunt, A. Oberman, S. S. Rich, M. A. Province, M. B. Miller

Research output: Contribution to journalArticle

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Abstract

OBJECTIVE: To conduct a full genome search for genes potentially influencing two related phenotypes: body mass index (BMI, kg/m2) and percent body fat (PBF) from bioelectric impedance in men and women. DESIGN: A total of 3383 participants, 1348 men and 2035 women; recruitment was initiated with hypertensive sibpairs and expanded to first-degree relatives in a multicenter study of hypertension genetics. MEASUREMENTS: Genotypes for 387 highly polymorphic markers spaced to provide a 10 cM map (CHLC-8) were generated by the NHLBI Mammalian Genotyping Service (Marshfield, WI, USA). Quantitative trait loci for obesity phenotypes, BMI and PBF, were examined with a variance components method using SOLAR, adjusting for hypertensive status, ethnicity, center, age, age2, sex, and age2 × sex. As we detected a significant genotype-by-sex interaction in initial models and because of the importance of sex effects in the expression of these phenotypes, models thereafter were stratified by sex. No genotype-by-ethnicity interactions were found. RESULTS: A QTL influencing PBF in women was detected on chromosomel 2q (12q24.3-12q24.32, maximum empirical LOD score = 3.8); a QTL influencing this phenotype in men was found on chromosome 15q (15q25.3, maximum empirical LOD score = 3.0). These QTLs were detected in Africa-America and white women (12q) and men (15q). QTLs influencing both BMI and PBF were found over a broad region on chromosome 3 in men. QTLs on chromosomes 3 and 12 were found in the combined sample of men and women, but with weaker significance. CONCLUSION: The locations with highest LOD scores have been previously reported for obesity phenotypes, indicating that at least two genomic regions influence obesity-related traits. Furthermore, our results indicate the importance of considering context-dependent effects in the search for obesity QTLs.

Original languageEnglish
Pages (from-to)639-649
Number of pages11
JournalInternational Journal of Obesity
Volume29
Issue number6
DOIs
Publication statusPublished - Jun 2005
Externally publishedYes

Fingerprint

African Americans
Genome
Adipose Tissue
Phenotype
Obesity
Chromosomes, Human, Pair 3
Genotype
National Heart, Lung, and Blood Institute (U.S.)
Chromosomes, Human, Pair 12
Quantitative Trait Loci
Electric Impedance
Multicenter Studies
Body Mass Index
Chromosomes
Hypertension
Genes

Keywords

  • Body composition
  • Body mass index
  • Linkage (genetic)

ASJC Scopus subject areas

  • Medicine (miscellaneous)
  • Endocrinology, Diabetes and Metabolism
  • Nutrition and Dietetics

Cite this

Sex-specific findings from a genome-wide linkage analysis of human fatness in non-Hispanic whites and African Americans : The HyperGEN Study. / Lewis, C. E.; North, K. E.; Arnett, D.; Borecki, I. B.; Coon, H.; Ellison, R. C.; Hunt, Steven; Oberman, A.; Rich, S. S.; Province, M. A.; Miller, M. B.

In: International Journal of Obesity, Vol. 29, No. 6, 06.2005, p. 639-649.

Research output: Contribution to journalArticle

Lewis, CE, North, KE, Arnett, D, Borecki, IB, Coon, H, Ellison, RC, Hunt, S, Oberman, A, Rich, SS, Province, MA & Miller, MB 2005, 'Sex-specific findings from a genome-wide linkage analysis of human fatness in non-Hispanic whites and African Americans: The HyperGEN Study', International Journal of Obesity, vol. 29, no. 6, pp. 639-649. https://doi.org/10.1038/sj.ijo.0802916
Lewis, C. E. ; North, K. E. ; Arnett, D. ; Borecki, I. B. ; Coon, H. ; Ellison, R. C. ; Hunt, Steven ; Oberman, A. ; Rich, S. S. ; Province, M. A. ; Miller, M. B. / Sex-specific findings from a genome-wide linkage analysis of human fatness in non-Hispanic whites and African Americans : The HyperGEN Study. In: International Journal of Obesity. 2005 ; Vol. 29, No. 6. pp. 639-649.
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abstract = "OBJECTIVE: To conduct a full genome search for genes potentially influencing two related phenotypes: body mass index (BMI, kg/m2) and percent body fat (PBF) from bioelectric impedance in men and women. DESIGN: A total of 3383 participants, 1348 men and 2035 women; recruitment was initiated with hypertensive sibpairs and expanded to first-degree relatives in a multicenter study of hypertension genetics. MEASUREMENTS: Genotypes for 387 highly polymorphic markers spaced to provide a 10 cM map (CHLC-8) were generated by the NHLBI Mammalian Genotyping Service (Marshfield, WI, USA). Quantitative trait loci for obesity phenotypes, BMI and PBF, were examined with a variance components method using SOLAR, adjusting for hypertensive status, ethnicity, center, age, age2, sex, and age2 × sex. As we detected a significant genotype-by-sex interaction in initial models and because of the importance of sex effects in the expression of these phenotypes, models thereafter were stratified by sex. No genotype-by-ethnicity interactions were found. RESULTS: A QTL influencing PBF in women was detected on chromosomel 2q (12q24.3-12q24.32, maximum empirical LOD score = 3.8); a QTL influencing this phenotype in men was found on chromosome 15q (15q25.3, maximum empirical LOD score = 3.0). These QTLs were detected in Africa-America and white women (12q) and men (15q). QTLs influencing both BMI and PBF were found over a broad region on chromosome 3 in men. QTLs on chromosomes 3 and 12 were found in the combined sample of men and women, but with weaker significance. CONCLUSION: The locations with highest LOD scores have been previously reported for obesity phenotypes, indicating that at least two genomic regions influence obesity-related traits. Furthermore, our results indicate the importance of considering context-dependent effects in the search for obesity QTLs.",
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AU - Borecki, I. B.

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