Mutation in TRMU related to transfer RNA modification modulates the phenotypic expression of the deafness-associated mitochondrial 12S ribosomal RNA mutations

Min Xin Guan, Qingfeng Yan, Xiaoming Li, Yelena Bykhovskaya, Jaime Gallo-Teran, Petr Hajek, Noriko Umeda, Hui Zhao, Gema Garrido, Emebet Mengesha, Tsutomu Suzuki, Ignacio Del Castillo, Jennifer Lynne Peters, Ronghua Li, Yaping Qian, Xinjian Wang, Ester Ballana, Mordechai Shohat, Jianxin Lu, Xavier P. Estivill & 2 others Kimitsuna Watanabe, Nathan Fischel-Ghodsian

Research output: Contribution to journalArticle

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Abstract

The human mitochondrial 12S ribosomal RNA (rRNA) A1555G mutation has been associated with aminoglycoside-induced and nonsyndromic deafness in many families worldwide. Our previous investigation revealed that the A1555G mutation is a primary factor underlying the development of deafness but is not sufficient to produce a deafness phenotype. However, it has been proposed that nuclear-modifier genes modulate the phenotypic manifestation of the A1555G mutation. Here, we identified the nuclear-modifier gene TRMU, which encodes a highly conserved mitochondrial protein related to transfer RNA (tRNA) modification. Genotyping analysis of TRMU in 613 subjects from 1 Arab-Israeli kindred, 210 European (Italian pedigrees and Spanish pedigrees) families, and 31 Chinese pedigrees carrying the A1555G or the C1494T mutation revealed a missense mutation (G28T) altering an invariant amino acid residue (A10S) in the evolutionarily conserved N-terminal region of the TRMU protein. Interestingly, all 18 Arab-Israeli/Italian-Spanish matrilineal relatives carrying both the TRMU A10S and 12S rRNA A1555G mutations exhibited prelingual profound deafness. Functional analysis showed that this mutation did not affect importation of TRMU precursors into mitochondria. However, the homozygous A10S mutation leads to a marked failure in mitochondrial tRNA metabolisms, specifically reducing the steady-state levels of mitochondrial tRNA. As a consequence, these defects contribute to the impairment of mitochondrial-protein synthesis. Resultant biochemical defects aggravate the mitochondrial dysfunction associated with the A1555G mutation, exceeding the threshold for expressing the deafness phenotype. These findings indicate that the mutated TRMU, acting as a modifier factor, modulates the phenotypic manifestation of the deafness-associated 12S rRNA mutations.

Original languageEnglish
Pages (from-to)291-302
Number of pages12
JournalAmerican Journal of Human Genetics
Volume79
Issue number2
DOIs
Publication statusPublished - Aug 2006
Externally publishedYes

Fingerprint

Deafness
Mutation
Pedigree
Modifier Genes
Mitochondrial Proteins
Transfer RNA
Phenotype
ribosomal RNA 12S
Missense Mutation
Mitochondria
Amino Acids

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

Cite this

Mutation in TRMU related to transfer RNA modification modulates the phenotypic expression of the deafness-associated mitochondrial 12S ribosomal RNA mutations. / Guan, Min Xin; Yan, Qingfeng; Li, Xiaoming; Bykhovskaya, Yelena; Gallo-Teran, Jaime; Hajek, Petr; Umeda, Noriko; Zhao, Hui; Garrido, Gema; Mengesha, Emebet; Suzuki, Tsutomu; Del Castillo, Ignacio; Peters, Jennifer Lynne; Li, Ronghua; Qian, Yaping; Wang, Xinjian; Ballana, Ester; Shohat, Mordechai; Lu, Jianxin; Estivill, Xavier P.; Watanabe, Kimitsuna; Fischel-Ghodsian, Nathan.

In: American Journal of Human Genetics, Vol. 79, No. 2, 08.2006, p. 291-302.

Research output: Contribution to journalArticle

Guan, MX, Yan, Q, Li, X, Bykhovskaya, Y, Gallo-Teran, J, Hajek, P, Umeda, N, Zhao, H, Garrido, G, Mengesha, E, Suzuki, T, Del Castillo, I, Peters, JL, Li, R, Qian, Y, Wang, X, Ballana, E, Shohat, M, Lu, J, Estivill, XP, Watanabe, K & Fischel-Ghodsian, N 2006, 'Mutation in TRMU related to transfer RNA modification modulates the phenotypic expression of the deafness-associated mitochondrial 12S ribosomal RNA mutations', American Journal of Human Genetics, vol. 79, no. 2, pp. 291-302. https://doi.org/10.1086/506389
Guan, Min Xin ; Yan, Qingfeng ; Li, Xiaoming ; Bykhovskaya, Yelena ; Gallo-Teran, Jaime ; Hajek, Petr ; Umeda, Noriko ; Zhao, Hui ; Garrido, Gema ; Mengesha, Emebet ; Suzuki, Tsutomu ; Del Castillo, Ignacio ; Peters, Jennifer Lynne ; Li, Ronghua ; Qian, Yaping ; Wang, Xinjian ; Ballana, Ester ; Shohat, Mordechai ; Lu, Jianxin ; Estivill, Xavier P. ; Watanabe, Kimitsuna ; Fischel-Ghodsian, Nathan. / Mutation in TRMU related to transfer RNA modification modulates the phenotypic expression of the deafness-associated mitochondrial 12S ribosomal RNA mutations. In: American Journal of Human Genetics. 2006 ; Vol. 79, No. 2. pp. 291-302.
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abstract = "The human mitochondrial 12S ribosomal RNA (rRNA) A1555G mutation has been associated with aminoglycoside-induced and nonsyndromic deafness in many families worldwide. Our previous investigation revealed that the A1555G mutation is a primary factor underlying the development of deafness but is not sufficient to produce a deafness phenotype. However, it has been proposed that nuclear-modifier genes modulate the phenotypic manifestation of the A1555G mutation. Here, we identified the nuclear-modifier gene TRMU, which encodes a highly conserved mitochondrial protein related to transfer RNA (tRNA) modification. Genotyping analysis of TRMU in 613 subjects from 1 Arab-Israeli kindred, 210 European (Italian pedigrees and Spanish pedigrees) families, and 31 Chinese pedigrees carrying the A1555G or the C1494T mutation revealed a missense mutation (G28T) altering an invariant amino acid residue (A10S) in the evolutionarily conserved N-terminal region of the TRMU protein. Interestingly, all 18 Arab-Israeli/Italian-Spanish matrilineal relatives carrying both the TRMU A10S and 12S rRNA A1555G mutations exhibited prelingual profound deafness. Functional analysis showed that this mutation did not affect importation of TRMU precursors into mitochondria. However, the homozygous A10S mutation leads to a marked failure in mitochondrial tRNA metabolisms, specifically reducing the steady-state levels of mitochondrial tRNA. As a consequence, these defects contribute to the impairment of mitochondrial-protein synthesis. Resultant biochemical defects aggravate the mitochondrial dysfunction associated with the A1555G mutation, exceeding the threshold for expressing the deafness phenotype. These findings indicate that the mutated TRMU, acting as a modifier factor, modulates the phenotypic manifestation of the deafness-associated 12S rRNA mutations.",
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AU - Guan, Min Xin

AU - Yan, Qingfeng

AU - Li, Xiaoming

AU - Bykhovskaya, Yelena

AU - Gallo-Teran, Jaime

AU - Hajek, Petr

AU - Umeda, Noriko

AU - Zhao, Hui

AU - Garrido, Gema

AU - Mengesha, Emebet

AU - Suzuki, Tsutomu

AU - Del Castillo, Ignacio

AU - Peters, Jennifer Lynne

AU - Li, Ronghua

AU - Qian, Yaping

AU - Wang, Xinjian

AU - Ballana, Ester

AU - Shohat, Mordechai

AU - Lu, Jianxin

AU - Estivill, Xavier P.

AU - Watanabe, Kimitsuna

AU - Fischel-Ghodsian, Nathan

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N2 - The human mitochondrial 12S ribosomal RNA (rRNA) A1555G mutation has been associated with aminoglycoside-induced and nonsyndromic deafness in many families worldwide. Our previous investigation revealed that the A1555G mutation is a primary factor underlying the development of deafness but is not sufficient to produce a deafness phenotype. However, it has been proposed that nuclear-modifier genes modulate the phenotypic manifestation of the A1555G mutation. Here, we identified the nuclear-modifier gene TRMU, which encodes a highly conserved mitochondrial protein related to transfer RNA (tRNA) modification. Genotyping analysis of TRMU in 613 subjects from 1 Arab-Israeli kindred, 210 European (Italian pedigrees and Spanish pedigrees) families, and 31 Chinese pedigrees carrying the A1555G or the C1494T mutation revealed a missense mutation (G28T) altering an invariant amino acid residue (A10S) in the evolutionarily conserved N-terminal region of the TRMU protein. Interestingly, all 18 Arab-Israeli/Italian-Spanish matrilineal relatives carrying both the TRMU A10S and 12S rRNA A1555G mutations exhibited prelingual profound deafness. Functional analysis showed that this mutation did not affect importation of TRMU precursors into mitochondria. However, the homozygous A10S mutation leads to a marked failure in mitochondrial tRNA metabolisms, specifically reducing the steady-state levels of mitochondrial tRNA. As a consequence, these defects contribute to the impairment of mitochondrial-protein synthesis. Resultant biochemical defects aggravate the mitochondrial dysfunction associated with the A1555G mutation, exceeding the threshold for expressing the deafness phenotype. These findings indicate that the mutated TRMU, acting as a modifier factor, modulates the phenotypic manifestation of the deafness-associated 12S rRNA mutations.

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