Multi-modal image registration

Matching MRI with histology

Lejla Alic, Joost C. Haeck, Stefan Klein, Karin Bol, Sandra T. Van Tiel, Piotr A. Wielopolski, Magda Bijster, Wiro J. Niessen, Monique Bernsen, Jifke F. Veenland, Marion De Jong

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Abstract

Spatial correspondence between histology and multi sequence MRI can provide information about the capabilities of non-invasive imaging to characterize cancerous tissue. However, shrinkage and deformation occurring during the excision of the tumor and the histological processing complicate the co registration of MR images with histological sections. This work proposes a methodology to establish a detailed 3D relation between histology sections and in vivo MRI tumor data. The key features of the methodology are a very dense histological sampling (up to 100 histology slices per tumor), mutual information based non-rigid B-spline registration, the utilization of the whole 3D data sets, and the exploitation of an intermediate ex vivo MRI. In this proof of concept paper, the methodology was applied to one tumor. We found that, after registration, the visual alignment of tumor borders and internal structures was fairly accurate. Utilizing the intermediate ex vivo MRI, it was possible to account for changes caused by the excision of the tumor: we observed a tumor expansion of 20%. Also the effects of fixation, dehydration and histological sectioning could be determined: 26% shrinkage of the tumor was found. The annotation of viable tissue, performed in histology and transformed to the in vivo MRI, matched clearly with high intensity regions in MRI. With this methodology, histological annotation can be directly related to the corresponding in vivo MRI. This is a vital step for the evaluation of the feasibility of multi-spectral MRI to depict histological ground-truth.

Original languageEnglish
Title of host publicationMedical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging
Volume7626
DOIs
Publication statusPublished - 15 Jun 2010
Externally publishedYes
EventMedical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging - San Diego, CA, United States
Duration: 14 Feb 201016 Feb 2010

Other

OtherMedical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging
CountryUnited States
CitySan Diego, CA
Period14/2/1016/2/10

Fingerprint

Histology
histology
Image registration
Magnetic resonance imaging
Tumors
tumors
Neoplasms
methodology
annotations
shrinkage
Tissue
ground truth
splines
exploitation
Dehydration
borders
dehydration
Splines
sampling
alignment

Keywords

  • Histology
  • MRI
  • Multi-modal registration
  • Tissue characterization
  • Tumor

ASJC Scopus subject areas

  • Electronic, Optical and Magnetic Materials
  • Atomic and Molecular Physics, and Optics
  • Biomaterials
  • Radiology Nuclear Medicine and imaging

Cite this

Alic, L., Haeck, J. C., Klein, S., Bol, K., Van Tiel, S. T., Wielopolski, P. A., ... De Jong, M. (2010). Multi-modal image registration: Matching MRI with histology. In Medical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging (Vol. 7626). [762603] https://doi.org/10.1117/12.844123

Multi-modal image registration : Matching MRI with histology. / Alic, Lejla; Haeck, Joost C.; Klein, Stefan; Bol, Karin; Van Tiel, Sandra T.; Wielopolski, Piotr A.; Bijster, Magda; Niessen, Wiro J.; Bernsen, Monique; Veenland, Jifke F.; De Jong, Marion.

Medical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging. Vol. 7626 2010. 762603.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Alic, L, Haeck, JC, Klein, S, Bol, K, Van Tiel, ST, Wielopolski, PA, Bijster, M, Niessen, WJ, Bernsen, M, Veenland, JF & De Jong, M 2010, Multi-modal image registration: Matching MRI with histology. in Medical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging. vol. 7626, 762603, Medical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging, San Diego, CA, United States, 14/2/10. https://doi.org/10.1117/12.844123
Alic L, Haeck JC, Klein S, Bol K, Van Tiel ST, Wielopolski PA et al. Multi-modal image registration: Matching MRI with histology. In Medical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging. Vol. 7626. 2010. 762603 https://doi.org/10.1117/12.844123
Alic, Lejla ; Haeck, Joost C. ; Klein, Stefan ; Bol, Karin ; Van Tiel, Sandra T. ; Wielopolski, Piotr A. ; Bijster, Magda ; Niessen, Wiro J. ; Bernsen, Monique ; Veenland, Jifke F. ; De Jong, Marion. / Multi-modal image registration : Matching MRI with histology. Medical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging. Vol. 7626 2010.
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