Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing

T. A. Quinn, S. Granite, M. A. Allessie, C. Antzelevitch, C. Bollensdorff, G. Bub, R. A B Burton, E. Cerbai, P. S. Chen, M. Delmar, D. DiFrancesco, Y. E. Earm, I. R. Efimov, M. Egger, E. Entcheva, M. Fink, R. Fischmeister, M. R. Franz, A. Garny, W. R. GilesT. Hannes, S. E. Harding, P. J. Hunter, G. Iribe, J. Jalife, C. R. Johnson, R. S. Kass, I. Kodama, G. Koren, P. Lord, V. S. Markhasin, S. Matsuoka, A. D. McCulloch, G. R. Mirams, G. E. Morley, S. Nattel, D. Noble, S. P. Olesen, A. V. Panfilov, N. A. Trayanova, U. Ravens, S. Richard, D. S. Rosenbaum, Y. Rudy, F. Sachs, F. B. Sachse, D. A. Saint, U. Schotten, O. Solovyova, P. Taggart, L. Tung, A. Varró, P. G. Volders, K. Wang, J. N. Weiss, E. Wettwer, E. White, R. Wilders, R. L. Winslow, P. Kohl

Research output: Contribution to journalArticle

35 Citations (Scopus)

Abstract

Cardiac experimental electrophysiology is in need of a well-defined Minimum Information Standard for recording, annotating, and reporting experimental data. As a step towards establishing this, we present a draft standard, called Minimum Information about a Cardiac Electrophysiology Experiment (MICEE). The ultimate goal is to develop a useful tool for cardiac electrophysiologists which facilitates and improves dissemination of the minimum information necessary for reproduction of cardiac electrophysiology research, allowing for easier comparison and utilisation of findings by others. It is hoped that this will enhance the integration of individual results into experimental, computational, and conceptual models. In its present form, this draft is intended for assessment and development by the research community. We invite the reader to join this effort, and, if deemed productive, implement the Minimum Information about a Cardiac Electrophysiology Experiment standard in their own work.

Original languageEnglish
Pages (from-to)4-10
Number of pages7
JournalProgress in Biophysics and Molecular Biology
Volume107
Issue number1
DOIs
Publication statusPublished - 1 Oct 2011
Externally publishedYes

Fingerprint

Cardiac Electrophysiology
Information Dissemination
Research
Reproduction
Research Design

Keywords

  • Cardiac electrophysiology
  • Computational modelling
  • Data sharing
  • Integration
  • Minimum Information Standard
  • Reproducibility

ASJC Scopus subject areas

  • Molecular Biology
  • Biophysics

Cite this

Minimum Information about a Cardiac Electrophysiology Experiment (MICEE) : Standardised reporting for model reproducibility, interoperability, and data sharing. / Quinn, T. A.; Granite, S.; Allessie, M. A.; Antzelevitch, C.; Bollensdorff, C.; Bub, G.; Burton, R. A B; Cerbai, E.; Chen, P. S.; Delmar, M.; DiFrancesco, D.; Earm, Y. E.; Efimov, I. R.; Egger, M.; Entcheva, E.; Fink, M.; Fischmeister, R.; Franz, M. R.; Garny, A.; Giles, W. R.; Hannes, T.; Harding, S. E.; Hunter, P. J.; Iribe, G.; Jalife, J.; Johnson, C. R.; Kass, R. S.; Kodama, I.; Koren, G.; Lord, P.; Markhasin, V. S.; Matsuoka, S.; McCulloch, A. D.; Mirams, G. R.; Morley, G. E.; Nattel, S.; Noble, D.; Olesen, S. P.; Panfilov, A. V.; Trayanova, N. A.; Ravens, U.; Richard, S.; Rosenbaum, D. S.; Rudy, Y.; Sachs, F.; Sachse, F. B.; Saint, D. A.; Schotten, U.; Solovyova, O.; Taggart, P.; Tung, L.; Varró, A.; Volders, P. G.; Wang, K.; Weiss, J. N.; Wettwer, E.; White, E.; Wilders, R.; Winslow, R. L.; Kohl, P.

In: Progress in Biophysics and Molecular Biology, Vol. 107, No. 1, 01.10.2011, p. 4-10.

Research output: Contribution to journalArticle

Quinn, TA, Granite, S, Allessie, MA, Antzelevitch, C, Bollensdorff, C, Bub, G, Burton, RAB, Cerbai, E, Chen, PS, Delmar, M, DiFrancesco, D, Earm, YE, Efimov, IR, Egger, M, Entcheva, E, Fink, M, Fischmeister, R, Franz, MR, Garny, A, Giles, WR, Hannes, T, Harding, SE, Hunter, PJ, Iribe, G, Jalife, J, Johnson, CR, Kass, RS, Kodama, I, Koren, G, Lord, P, Markhasin, VS, Matsuoka, S, McCulloch, AD, Mirams, GR, Morley, GE, Nattel, S, Noble, D, Olesen, SP, Panfilov, AV, Trayanova, NA, Ravens, U, Richard, S, Rosenbaum, DS, Rudy, Y, Sachs, F, Sachse, FB, Saint, DA, Schotten, U, Solovyova, O, Taggart, P, Tung, L, Varró, A, Volders, PG, Wang, K, Weiss, JN, Wettwer, E, White, E, Wilders, R, Winslow, RL & Kohl, P 2011, 'Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing', Progress in Biophysics and Molecular Biology, vol. 107, no. 1, pp. 4-10. https://doi.org/10.1016/j.pbiomolbio.2011.07.001
Quinn, T. A. ; Granite, S. ; Allessie, M. A. ; Antzelevitch, C. ; Bollensdorff, C. ; Bub, G. ; Burton, R. A B ; Cerbai, E. ; Chen, P. S. ; Delmar, M. ; DiFrancesco, D. ; Earm, Y. E. ; Efimov, I. R. ; Egger, M. ; Entcheva, E. ; Fink, M. ; Fischmeister, R. ; Franz, M. R. ; Garny, A. ; Giles, W. R. ; Hannes, T. ; Harding, S. E. ; Hunter, P. J. ; Iribe, G. ; Jalife, J. ; Johnson, C. R. ; Kass, R. S. ; Kodama, I. ; Koren, G. ; Lord, P. ; Markhasin, V. S. ; Matsuoka, S. ; McCulloch, A. D. ; Mirams, G. R. ; Morley, G. E. ; Nattel, S. ; Noble, D. ; Olesen, S. P. ; Panfilov, A. V. ; Trayanova, N. A. ; Ravens, U. ; Richard, S. ; Rosenbaum, D. S. ; Rudy, Y. ; Sachs, F. ; Sachse, F. B. ; Saint, D. A. ; Schotten, U. ; Solovyova, O. ; Taggart, P. ; Tung, L. ; Varró, A. ; Volders, P. G. ; Wang, K. ; Weiss, J. N. ; Wettwer, E. ; White, E. ; Wilders, R. ; Winslow, R. L. ; Kohl, P. / Minimum Information about a Cardiac Electrophysiology Experiment (MICEE) : Standardised reporting for model reproducibility, interoperability, and data sharing. In: Progress in Biophysics and Molecular Biology. 2011 ; Vol. 107, No. 1. pp. 4-10.
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AU - Allessie, M. A.

AU - Antzelevitch, C.

AU - Bollensdorff, C.

AU - Bub, G.

AU - Burton, R. A B

AU - Cerbai, E.

AU - Chen, P. S.

AU - Delmar, M.

AU - DiFrancesco, D.

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AU - Giles, W. R.

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AU - Harding, S. E.

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AU - Iribe, G.

AU - Jalife, J.

AU - Johnson, C. R.

AU - Kass, R. S.

AU - Kodama, I.

AU - Koren, G.

AU - Lord, P.

AU - Markhasin, V. S.

AU - Matsuoka, S.

AU - McCulloch, A. D.

AU - Mirams, G. R.

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AU - Nattel, S.

AU - Noble, D.

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AU - Panfilov, A. V.

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AU - Tung, L.

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AU - Volders, P. G.

AU - Wang, K.

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AU - Wettwer, E.

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