Managing biological data using bdbms

Mohamed Y. Eltabakh, Mourad Ouzzani, Walid G. Aref, Ahmed Elmagarmid, Yasin Laura-Silva, Muhammad U. Arshad, David Salt, Ivan Baxter

Research output: Chapter in Book/Report/Conference proceedingConference contribution

14 Citations (Scopus)

Abstract

We demonstrate bdbms, an extensible database engine for biological databases. bdbms started on the observation that database technology has not kept pace with the specific requirements of biological databases and that several needed key functionalities are not supported at the engine level. While bdbms aims at supporting several of these functionalities, this demo focuses on: (1) Annotation and provenance management including storage, indexing, querying, and propagation, (2) Local dependency tracking of dependencies and derivations among data items, and (3) Update authorization to support data curation. We demonstrate how bdbms enables biologists to manipulate their databases, annotations, and derivation information in a unified database system using the Purdue Ionomics Information Management System (PiiMS) as a case study.

Original languageEnglish
Title of host publicationProceedings - International Conference on Data Engineering
Pages1600-1603
Number of pages4
DOIs
Publication statusPublished - 1 Oct 2008
Externally publishedYes
Event2008 IEEE 24th International Conference on Data Engineering, ICDE'08 - Cancun, Mexico
Duration: 7 Apr 200812 Apr 2008

Other

Other2008 IEEE 24th International Conference on Data Engineering, ICDE'08
CountryMexico
CityCancun
Period7/4/0812/4/08

Fingerprint

Storage management
Engines
Information management

ASJC Scopus subject areas

  • Information Systems
  • Signal Processing
  • Software

Cite this

Eltabakh, M. Y., Ouzzani, M., Aref, W. G., Elmagarmid, A., Laura-Silva, Y., Arshad, M. U., ... Baxter, I. (2008). Managing biological data using bdbms. In Proceedings - International Conference on Data Engineering (pp. 1600-1603). [4497631] https://doi.org/10.1109/ICDE.2008.4497631

Managing biological data using bdbms. / Eltabakh, Mohamed Y.; Ouzzani, Mourad; Aref, Walid G.; Elmagarmid, Ahmed; Laura-Silva, Yasin; Arshad, Muhammad U.; Salt, David; Baxter, Ivan.

Proceedings - International Conference on Data Engineering. 2008. p. 1600-1603 4497631.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Eltabakh, MY, Ouzzani, M, Aref, WG, Elmagarmid, A, Laura-Silva, Y, Arshad, MU, Salt, D & Baxter, I 2008, Managing biological data using bdbms. in Proceedings - International Conference on Data Engineering., 4497631, pp. 1600-1603, 2008 IEEE 24th International Conference on Data Engineering, ICDE'08, Cancun, Mexico, 7/4/08. https://doi.org/10.1109/ICDE.2008.4497631
Eltabakh MY, Ouzzani M, Aref WG, Elmagarmid A, Laura-Silva Y, Arshad MU et al. Managing biological data using bdbms. In Proceedings - International Conference on Data Engineering. 2008. p. 1600-1603. 4497631 https://doi.org/10.1109/ICDE.2008.4497631
Eltabakh, Mohamed Y. ; Ouzzani, Mourad ; Aref, Walid G. ; Elmagarmid, Ahmed ; Laura-Silva, Yasin ; Arshad, Muhammad U. ; Salt, David ; Baxter, Ivan. / Managing biological data using bdbms. Proceedings - International Conference on Data Engineering. 2008. pp. 1600-1603
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