IE-Kb: Intron exon knowledge base

Meena K. Sakharkar; Pandjassarame Kangueane; Tong W. Woon; Tin W. Tan; Prasanna R. Kolatkar; Manyuan Long; Sandro J. De Souza

doi:10.1093/bioinformatics/16.12.1151

IE-Kb: Intron exon knowledge base

Meena K. Sakharkar, Pandjassarame Kangueane, Tong W. Woon, Tin W. Tan, Prasanna R. Kolatkar, Manyuan Long, Sandro J. De Souza

Research output: Contribution to journal › Article

9 Citations (Scopus)

Abstract

IE-Kb (Intron Exon-Knowledge base) illustrates the intron-exon dynamics in eukaryotic genes. We have developed three different knowledge sets, namely 'Non-redundant ExInt', 'Non-redundant Pfam-ExInt complement' and 'Non-redundant GenBank eukaryotic subdivisional sets' to understand this phenomenon. Statistical analysis is performed on each knowledge set and the results are made available online. The entries in knowledge sets are ranked based on their intron length, exon length and protein length with relational hyper-links to the corresponding intron phase, intron position, intron sequence, gene definition and parent GenBank entry.

Original language	English
Pages (from-to)	1151-1152
Number of pages	2
Journal	Bioinformatics
Volume	16
Issue number	12
DOIs	https://doi.org/10.1093/bioinformatics/16.12.1151
Publication status	Published - 1 Jan 2000

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ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

Cite this

Sakharkar, M. K., Kangueane, P., Woon, T. W., Tan, T. W., Kolatkar, P. R., Long, M., & De Souza, S. J. (2000). IE-Kb: Intron exon knowledge base. Bioinformatics, 16(12), 1151-1152. https://doi.org/10.1093/bioinformatics/16.12.1151

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10.1093/bioinformatics/16.12.1151