IE-Kb: Intron exon knowledge base

Meena K. Sakharkar, Pandjassarame Kangueane, Tong W. Woon, Tin W. Tan, Prasanna R. Kolatkar, Manyuan Long, Sandro J. De Souza

Research output: Contribution to journalArticle

9 Citations (Scopus)

Abstract

IE-Kb (Intron Exon-Knowledge base) illustrates the intron-exon dynamics in eukaryotic genes. We have developed three different knowledge sets, namely 'Non-redundant ExInt', 'Non-redundant Pfam-ExInt complement' and 'Non-redundant GenBank eukaryotic subdivisional sets' to understand this phenomenon. Statistical analysis is performed on each knowledge set and the results are made available online. The entries in knowledge sets are ranked based on their intron length, exon length and protein length with relational hyper-links to the corresponding intron phase, intron position, intron sequence, gene definition and parent GenBank entry.

Original languageEnglish
Pages (from-to)1151-1152
Number of pages2
JournalBioinformatics
Volume16
Issue number12
DOIs
Publication statusPublished - 1 Jan 2000

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ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

Cite this

Sakharkar, M. K., Kangueane, P., Woon, T. W., Tan, T. W., Kolatkar, P. R., Long, M., & De Souza, S. J. (2000). IE-Kb: Intron exon knowledge base. Bioinformatics, 16(12), 1151-1152. https://doi.org/10.1093/bioinformatics/16.12.1151