IE-Kb: Intron exon knowledge base

Meena K. Sakharkar, Pandjassarame Kangueane, Tong W. Woon, Tin W. Tan, Prasanna Kolatkar, Manyuan Long, Sandro J. De Souza

Research output: Contribution to journalArticle

9 Citations (Scopus)

Abstract

IE-Kb (Intron Exon-Knowledge base) illustrates the intron-exon dynamics in eukaryotic genes. We have developed three different knowledge sets, namely 'Non-redundant ExInt', 'Non-redundant Pfam-ExInt complement' and 'Non-redundant GenBank eukaryotic subdivisional sets' to understand this phenomenon. Statistical analysis is performed on each knowledge set and the results are made available online. The entries in knowledge sets are ranked based on their intron length, exon length and protein length with relational hyper-links to the corresponding intron phase, intron position, intron sequence, gene definition and parent GenBank entry.

Original languageEnglish
Pages (from-to)1151-1152
Number of pages2
JournalBioinformatics
Volume16
Issue number12
Publication statusPublished - 1 Dec 2000
Externally publishedYes

Fingerprint

Knowledge Bases
Knowledge Base
Introns
Exons
Genes
Statistical methods
Nucleic Acid Databases
Gene
Proteins
Statistical Analysis
Complement
Protein
Knowledge

ASJC Scopus subject areas

  • Clinical Biochemistry
  • Computer Science Applications
  • Computational Theory and Mathematics

Cite this

Sakharkar, M. K., Kangueane, P., Woon, T. W., Tan, T. W., Kolatkar, P., Long, M., & De Souza, S. J. (2000). IE-Kb: Intron exon knowledge base. Bioinformatics, 16(12), 1151-1152.

IE-Kb : Intron exon knowledge base. / Sakharkar, Meena K.; Kangueane, Pandjassarame; Woon, Tong W.; Tan, Tin W.; Kolatkar, Prasanna; Long, Manyuan; De Souza, Sandro J.

In: Bioinformatics, Vol. 16, No. 12, 01.12.2000, p. 1151-1152.

Research output: Contribution to journalArticle

Sakharkar, MK, Kangueane, P, Woon, TW, Tan, TW, Kolatkar, P, Long, M & De Souza, SJ 2000, 'IE-Kb: Intron exon knowledge base', Bioinformatics, vol. 16, no. 12, pp. 1151-1152.
Sakharkar MK, Kangueane P, Woon TW, Tan TW, Kolatkar P, Long M et al. IE-Kb: Intron exon knowledge base. Bioinformatics. 2000 Dec 1;16(12):1151-1152.
Sakharkar, Meena K. ; Kangueane, Pandjassarame ; Woon, Tong W. ; Tan, Tin W. ; Kolatkar, Prasanna ; Long, Manyuan ; De Souza, Sandro J. / IE-Kb : Intron exon knowledge base. In: Bioinformatics. 2000 ; Vol. 16, No. 12. pp. 1151-1152.
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