Abstract
IE-Kb (Intron Exon-Knowledge base) illustrates the intron-exon dynamics in eukaryotic genes. We have developed three different knowledge sets, namely 'Non-redundant ExInt', 'Non-redundant Pfam-ExInt complement' and 'Non-redundant GenBank eukaryotic subdivisional sets' to understand this phenomenon. Statistical analysis is performed on each knowledge set and the results are made available online. The entries in knowledge sets are ranked based on their intron length, exon length and protein length with relational hyper-links to the corresponding intron phase, intron position, intron sequence, gene definition and parent GenBank entry.
| Original language | English |
|---|---|
| Pages (from-to) | 1151-1152 |
| Number of pages | 2 |
| Journal | Bioinformatics |
| Volume | 16 |
| Issue number | 12 |
| Publication status | Published - 1 Dec 2000 |
| Externally published | Yes |
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ASJC Scopus subject areas
- Clinical Biochemistry
- Computer Science Applications
- Computational Theory and Mathematics
Cite this
IE-Kb : Intron exon knowledge base. / Sakharkar, Meena K.; Kangueane, Pandjassarame; Woon, Tong W.; Tan, Tin W.; Kolatkar, Prasanna; Long, Manyuan; De Souza, Sandro J.
In: Bioinformatics, Vol. 16, No. 12, 01.12.2000, p. 1151-1152.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - IE-Kb
T2 - Intron exon knowledge base
AU - Sakharkar, Meena K.
AU - Kangueane, Pandjassarame
AU - Woon, Tong W.
AU - Tan, Tin W.
AU - Kolatkar, Prasanna
AU - Long, Manyuan
AU - De Souza, Sandro J.
PY - 2000/12/1
Y1 - 2000/12/1
N2 - IE-Kb (Intron Exon-Knowledge base) illustrates the intron-exon dynamics in eukaryotic genes. We have developed three different knowledge sets, namely 'Non-redundant ExInt', 'Non-redundant Pfam-ExInt complement' and 'Non-redundant GenBank eukaryotic subdivisional sets' to understand this phenomenon. Statistical analysis is performed on each knowledge set and the results are made available online. The entries in knowledge sets are ranked based on their intron length, exon length and protein length with relational hyper-links to the corresponding intron phase, intron position, intron sequence, gene definition and parent GenBank entry.
AB - IE-Kb (Intron Exon-Knowledge base) illustrates the intron-exon dynamics in eukaryotic genes. We have developed three different knowledge sets, namely 'Non-redundant ExInt', 'Non-redundant Pfam-ExInt complement' and 'Non-redundant GenBank eukaryotic subdivisional sets' to understand this phenomenon. Statistical analysis is performed on each knowledge set and the results are made available online. The entries in knowledge sets are ranked based on their intron length, exon length and protein length with relational hyper-links to the corresponding intron phase, intron position, intron sequence, gene definition and parent GenBank entry.
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UR - http://www.scopus.com/inward/citedby.url?scp=0034491029&partnerID=8YFLogxK
M3 - Article
C2 - 11159334
AN - SCOPUS:0034491029
VL - 16
SP - 1151
EP - 1152
JO - Bioinformatics
JF - Bioinformatics
SN - 1367-4803
IS - 12
ER -