A Markov random field approach to microarray image gridding

Giuliano Antoniol, Michele Ceccarelli

Research output: Chapter in Book/Report/Conference proceedingConference contribution

24 Citations (Scopus)

Abstract

The paper reports a novel approach for the problem of automatic gridding in Microarray images. The solution is modeled as a Bayesian Random Field with a Gibbs prior possibly containing first order cliques (1-clique). On the contrary of previously published contributions, this paper does not assume second order cliques, instead it relies on a two step procedure to locate microarray spots. First a set of guide spots are used to interpolate a reference grid. The final grid is then produced by an a-posteriori maximization which takes into account the reference rectangular grid and local deformations. The algorithm is completely automatic and no human intervention is required, the only critical parameter being the range of the radius of the guide spots.

Original languageEnglish
Title of host publicationProceedings - International Conference on Pattern Recognition
EditorsJ. Kittler, M. Petrou, M. Nixon
Pages550-553
Number of pages4
Volume3
DOIs
Publication statusPublished - 20 Dec 2004
Externally publishedYes
EventProceedings of the 17th International Conference on Pattern Recognition, ICPR 2004 - Cambridge, United Kingdom
Duration: 23 Aug 200426 Aug 2004

Other

OtherProceedings of the 17th International Conference on Pattern Recognition, ICPR 2004
CountryUnited Kingdom
CityCambridge
Period23/8/0426/8/04

Fingerprint

Microarrays

ASJC Scopus subject areas

  • Electrical and Electronic Engineering
  • Computer Vision and Pattern Recognition
  • Hardware and Architecture

Cite this

Antoniol, G., & Ceccarelli, M. (2004). A Markov random field approach to microarray image gridding. In J. Kittler, M. Petrou, & M. Nixon (Eds.), Proceedings - International Conference on Pattern Recognition (Vol. 3, pp. 550-553) https://doi.org/10.1109/ICPR.2004.1334588

A Markov random field approach to microarray image gridding. / Antoniol, Giuliano; Ceccarelli, Michele.

Proceedings - International Conference on Pattern Recognition. ed. / J. Kittler; M. Petrou; M. Nixon. Vol. 3 2004. p. 550-553.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Antoniol, G & Ceccarelli, M 2004, A Markov random field approach to microarray image gridding. in J Kittler, M Petrou & M Nixon (eds), Proceedings - International Conference on Pattern Recognition. vol. 3, pp. 550-553, Proceedings of the 17th International Conference on Pattern Recognition, ICPR 2004, Cambridge, United Kingdom, 23/8/04. https://doi.org/10.1109/ICPR.2004.1334588
Antoniol G, Ceccarelli M. A Markov random field approach to microarray image gridding. In Kittler J, Petrou M, Nixon M, editors, Proceedings - International Conference on Pattern Recognition. Vol. 3. 2004. p. 550-553 https://doi.org/10.1109/ICPR.2004.1334588
Antoniol, Giuliano ; Ceccarelli, Michele. / A Markov random field approach to microarray image gridding. Proceedings - International Conference on Pattern Recognition. editor / J. Kittler ; M. Petrou ; M. Nixon. Vol. 3 2004. pp. 550-553
@inproceedings{8bc0e7f451fc454ba9c9e4b047203115,
title = "A Markov random field approach to microarray image gridding",
abstract = "The paper reports a novel approach for the problem of automatic gridding in Microarray images. The solution is modeled as a Bayesian Random Field with a Gibbs prior possibly containing first order cliques (1-clique). On the contrary of previously published contributions, this paper does not assume second order cliques, instead it relies on a two step procedure to locate microarray spots. First a set of guide spots are used to interpolate a reference grid. The final grid is then produced by an a-posteriori maximization which takes into account the reference rectangular grid and local deformations. The algorithm is completely automatic and no human intervention is required, the only critical parameter being the range of the radius of the guide spots.",
author = "Giuliano Antoniol and Michele Ceccarelli",
year = "2004",
month = "12",
day = "20",
doi = "10.1109/ICPR.2004.1334588",
language = "English",
isbn = "0769521282",
volume = "3",
pages = "550--553",
editor = "J. Kittler and M. Petrou and M. Nixon",
booktitle = "Proceedings - International Conference on Pattern Recognition",

}

TY - GEN

T1 - A Markov random field approach to microarray image gridding

AU - Antoniol, Giuliano

AU - Ceccarelli, Michele

PY - 2004/12/20

Y1 - 2004/12/20

N2 - The paper reports a novel approach for the problem of automatic gridding in Microarray images. The solution is modeled as a Bayesian Random Field with a Gibbs prior possibly containing first order cliques (1-clique). On the contrary of previously published contributions, this paper does not assume second order cliques, instead it relies on a two step procedure to locate microarray spots. First a set of guide spots are used to interpolate a reference grid. The final grid is then produced by an a-posteriori maximization which takes into account the reference rectangular grid and local deformations. The algorithm is completely automatic and no human intervention is required, the only critical parameter being the range of the radius of the guide spots.

AB - The paper reports a novel approach for the problem of automatic gridding in Microarray images. The solution is modeled as a Bayesian Random Field with a Gibbs prior possibly containing first order cliques (1-clique). On the contrary of previously published contributions, this paper does not assume second order cliques, instead it relies on a two step procedure to locate microarray spots. First a set of guide spots are used to interpolate a reference grid. The final grid is then produced by an a-posteriori maximization which takes into account the reference rectangular grid and local deformations. The algorithm is completely automatic and no human intervention is required, the only critical parameter being the range of the radius of the guide spots.

UR - http://www.scopus.com/inward/record.url?scp=10044294938&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=10044294938&partnerID=8YFLogxK

U2 - 10.1109/ICPR.2004.1334588

DO - 10.1109/ICPR.2004.1334588

M3 - Conference contribution

SN - 0769521282

VL - 3

SP - 550

EP - 553

BT - Proceedings - International Conference on Pattern Recognition

A2 - Kittler, J.

A2 - Petrou, M.

A2 - Nixon, M.

ER -