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Research Output 1996 2019

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Article
2019
1 Citation (Scopus)

Alterations in long noncoding RNAs in women with and without polycystic ovarian syndrome

Butler, A. E., Hayat, S., Dargham, S. R., Malek, J. A., Abdulla, S. A., Mohamoud, Y. A., Suhre, K., Sathyapalan, T. & Atkin, S. L., 1 Jan 2019, (Accepted/In press) In : Clinical Endocrinology.

Research output: Contribution to journalArticle

Long Noncoding RNA
Polycystic Ovary Syndrome
Follicular Phase
Anti-Mullerian Hormone
Menstrual Cycle
Open Access
Epithelial-Mesenchymal Transition
cultured cells
Ovarian Neoplasms
inhibitors
Phosphotransferases

High-resolution protein–protein interaction mapping using all-versus-all sequencing (AVA-Seq)

Andrews, S. S., Ramadan, S., Al-Thani, N. M., Ahmed, I., Ali Mohamoud, Y. & Malek, J., 1 Jan 2019, In : Journal of Biological Chemistry. 294, 30, p. 11549-11558 10 p.

Research output: Contribution to journalArticle

Open Access
Hybrid systems
Proteins
Protein Interaction Mapping
Bacterial Transformation
Fusion reactions
Open Access
Genome
Population
Iraq
Chloroplast Genome
Mitochondrial Genome
2 Citations (Scopus)
Open Access
Phenotype
Neoplasms
Ovarian Neoplasms
Real-Time Polymerase Chain Reaction
Exons
2018
3 Citations (Scopus)

A comprehensive metabolomic data set of date palm fruit

Stephan, N., Halama, A., Mathew, S., Hayat, S., Bhagwat, A., Mathew, L. S., Diboun, I., Malek, J. & Suhre, K., 1 Jun 2018, In : Data in Brief. 18, p. 1313-1321 9 p.

Research output: Contribution to journalArticle

Phoenix dactylifera
metabolomics
dates (fruit)
fruits
biochemical pathways

Exome sequencing-based identification of novel type 2 diabetes risk allele loci in the Qatari population

O’Beirne, S. L., Salit, J., Rodriguez-Flores, J. L., Staudt, M. R., Abi Khalil, C., Fakhro, K. A. M. A., Robay, A., Ramstetter, M. D., Malek, J., Zirie, M., Jayyousi, A., Badii, R., Al-Marri, A. A. N., Bener, A., Mahmoud, M., Chiuchiolo, M. J., Al-Shakaki, A., Chidiac, O., Stadler, D., Mezey, J. G. & 1 others, Crystal, R., 1 Sep 2018, In : PLoS One. 13, 9, e0199837.

Research output: Contribution to journalArticle

Exome
Medical problems
noninsulin-dependent diabetes mellitus
Type 2 Diabetes Mellitus
Alleles

Genotyping-by-sequencing identifies date palm clone preference in agronomics of the State of Qatar

Thareja, G., Mathew, S., Mathew, L. S., Ali Mohamoud, Y., Suhre, K. & Malek, J., 1 Dec 2018, In : PLoS One. 13, 12, e0207299.

Research output: Contribution to journalArticle

Qatar
Phoenix dactylifera
Fruits
genotyping
Clone Cells
7 Citations (Scopus)

Genus-wide sequencing supports a two-locus model for sex-determination in Phoenix

Torres, M. F., Mathew, L. S., Ahmed, I., Al Azwani, I., Krueger, R., Rivera-Nuñez, D., Ali Mohamoud, Y., Clark, A. G., Suhre, K. & Malek, J., 1 Dec 2018, In : Nature Communications. 9, 1, 3969.

Research output: Contribution to journalArticle

Phoenix (AZ)
sequencing
loci
Genes
genes
1 Citation (Scopus)

Metabolic changes of the blood metabolome after a date fruit challenge

Mathew, S., Halama, A., Abdul Kader, S., Choe, M., Mohney, R. P., Malek, J. & Suhre, K., 1 Oct 2018, In : Journal of Functional Foods. 49, p. 267-276 10 p.

Research output: Contribution to journalArticle

metabolome
Metabolome
dates (fruit)
metabolites
blood
5 Citations (Scopus)

Point-of-care whole-exome sequencing of idiopathic male infertility

Fakhro, K. A. M. A., Elbardisi, H., Arafa, M., Robay, A., Rodriguez-Flores, J. L., Al-Shakaki, A., Syed, N., Mezey, J. G., Abi Khalil, C., Malek, J., Al-Ansari, A., Al Said, S. & Crystal, R., 1 Nov 2018, In : Genetics in Medicine. 20, 11, p. 1365-1373 9 p.

Research output: Contribution to journalArticle

Point-of-Care Systems
Exome
Male Infertility
Genes
Middle East
10 Citations (Scopus)
Exome
sequencing
Quantitative Trait Loci
loci
Metabolites
2017
64 Citations (Scopus)

Connecting genetic risk to disease end points through the human blood plasma proteome

Suhre, K., Arnold, M., Bhagwat, A., Cotton, R. J., Engelke, R., Raffler, J., Sarwath, H., Thareja, G., Wahl, A., Delisle, R. K., Gold, L., Pezer, M., Lauc, G., Selim, M. A. E. D., Mook-Kanamori, D. O., Aldous, E., Ali Mohamoud, Y., Malek, J., Strauch, K., Grallert, H. & 4 others, Peters, A., Kastenmüller, G., Gieger, C. & Graumann, J., 27 Feb 2017, In : Nature Communications. 8, 14357.

Research output: Contribution to journalArticle

proteome
blood plasma
genome
Genome-Wide Association Study
Proteome
1 Citation (Scopus)

Erratum: Connecting genetic risk to disease end points through the human blood plasma proteome

Suhre, K., Arnold, M., Bhagwat, A., Cotton, R. J., Engelke, R., Raffler, J., Sarwath, H., Thareja, G., Wahl, A., DeLisle, R. K., Gold, L., Pezer, M., Lauc, G., El-Din Selim, M. A., Mook-Kanamori, D. O., Aldous, E., Ali Mohamoud, Y., Malek, J., Strauch, K., Grallert, H. & 4 others, Peters, A., Kastenmüller, G., Gieger, C. & Graumann, J., 11 Apr 2017, In : Nature Communications. 8, 1 p.

Research output: Contribution to journalArticle

proteome
blood plasma
Proteome
Blood
Plasmas
17 Citations (Scopus)

Mutation in noncoding RNA RNU12 causes early onset cerebellar ataxia

Elsaid, M. F., Chalhoub, N., Ben-Omran, T., Kumar, P., Kamel, H., Ibrahim, K., Ali Mohamoud, Y., Aldous, E., Al Azwani, I., Malek, J., Suhre, K., Ross, M. E. & Kamal Abd El Aleem, A., 1 Jan 2017, In : Annals of Neurology. 81, 1, p. 68-78 11 p.

Research output: Contribution to journalArticle

Spinocerebellar Degenerations
Untranslated RNA
Genome
Spliceosomes
Mutation
2016
69 Citations (Scopus)
Carcinoma
Ovarian Neoplasms
Messenger RNA
Neoplasms
RNA
34 Citations (Scopus)

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

Rodriguez-Flores, J. L., Fakhro, K. A. M. A., Agosto-Perez, F., Ramstetter, M. D., Arbiza, L., Vincent, T. L., Robay, A., Malek, J., Suhre, K., Chouchane, L., Badii, R., Al-Marri, A. A. N., Abi Khalil, C., Zirie, M., Jayyousi, A., Salit, J., Keinan, A., Clark, A. G., Crystal, R. & Mezey, J. G., 1 Feb 2016, In : Genome Research. 26, 2, p. 151-162 12 p.

Research output: Contribution to journalArticle

Neanderthals
Genome
Population
Emigration and Immigration
Population Groups
5 Citations (Scopus)

Preferential Allele Expression Analysis Identifies Shared Germline and Somatic Driver Genes in Advanced Ovarian Cancer

Halabi, N., Martinez, A., Al-Farsi, H., Mery, E., Puydenus, L., Pujol, P., Khalak, H. G., McLurcan, C., Ferron, G., Querleu, D., Al Azwani, I., Aldous, E., Ali Mohamoud, Y., Malek, J. & Tabrizi, A. R., 2016, In : PLoS Genetics. 12, 1, e1005755.

Research output: Contribution to journalArticle

ovarian neoplasms
Ovarian Neoplasms
cancer
germ cells
allele
26 Citations (Scopus)

The Qatar genome: A population-specific tool for precision medicine in the Middle East

Fakhro, K. A. M. A., Staudt, M. R., Ramstetter, M. D., Robay, A., Malek, J., Badii, R., Al-Marri, A. A. N., Abi Khalil, C., Al-Shakaki, A., Chidiac, O., Stadler, D., Zirie, M., Jayyousi, A., Salit, J., Mezey, J. G., Crystal, R. & Rodriguez-Flores, J. L., 30 Jun 2016, In : Human Genome Variation. 3, 16016.

Research output: Contribution to journalArticle

Open Access
Qatar
Precision Medicine
Middle East
Medicine
Genes
9 Citations (Scopus)

Type 2 diabetes risk allele loci in the Qatari population

O'Beirne, S. L., Salit, J., Rodriguez-Flores, J. L., Staudt, M. R., Abi Khalil, C., Fakhro, K. A. M. A., Robay, A., Ramstetter, M. D., Al Azwani, I., Malek, J., Zirie, M., Jayyousi, A., Badii, R., Al-Nabet Al-marri, A., Chiuchiolo, M. J., Al-Shakaki, A., Chidiac, O., Gharbiah, M., Bener, A., Stadler, D. & 3 others, Hackett, N. R., Mezey, J. G. & Crystal, R., 1 Jul 2016, In : PLoS One. 11, 7, e0156834.

Research output: Contribution to journalArticle

Medical problems
noninsulin-dependent diabetes mellitus
Type 2 Diabetes Mellitus
Alleles
Polymorphism
2015
19 Citations (Scopus)

A genome-wide survey of date palm cultivars supports two major subpopulations in Phoenix dactylifera

Mathew, L. S., Seidel, M. A., George, B., Mathew, S., Spannagl, M., Haberer, G., Torres, M. F., Aldous, E., Al-Azwani, E. K., Diboun, I., Krueger, R. R., Mayer, K. F. X., Ali Mohamoud, Y., Suhre, K. & Malek, J., 2015, In : G3: Genes, Genomes, Genetics. 5, 7, p. 1429-1438 10 p.

Research output: Contribution to journalArticle

Genome
Northern Africa
Single Nucleotide Polymorphism
Civilization
Western Africa
3 Citations (Scopus)

Copy number variations in the genome of the Qatari population

Fakhro, K. A. M. A., Yousri, N., Rodriguez-Flores, J. L., Robay, A., Staudt, M. R., Agosto-Perez, F., Salit, J., Malek, J., Suhre, K., Jayyousi, A., Zirie, M., Stadler, D., Mezey, J. G. & Crystal, R., 22 Oct 2015, In : BMC Genomics. 16, 1, 834.

Research output: Contribution to journalArticle

Genome
Population
Single Nucleotide Polymorphism
Chromosome Disorders
Databases
9 Citations (Scopus)

Metabolomics of dates (Phoenix dactylifera) reveals a highly dynamic ripening process accounting for major variation in fruit composition

Diboun, I., Mathew, S., Al-Rayyashi, M., Elrayess, M., Torres, M., Halama, A., Méret, M., Mohney, R. P., Karoly, E. D., Malek, J. & Suhre, K., 16 Dec 2015, In : BMC Plant Biology. 15, 1, 291.

Research output: Contribution to journalArticle

fruit composition
Phoenix dactylifera
metabolomics
ripening
metabolome
50 Citations (Scopus)

Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop

Hazzouri, K. M., Flowers, J. M., Visser, H. J., Khierallah, H. S. M., Rosas, U., Pham, G. M., Meyer, R. S., Johansen, C. K., Fresquez, Z. A., Masmoudi, K., Haider, N., El Kadri, N., Idaghdour, Y., Malek, J., Thirkhill, D., Markhand, G. S., Krueger, R. R., Zaid, A. & Purugganan, M. D., 9 Nov 2015, In : Nature Communications. 6, 8824.

Research output: Contribution to journalArticle

sequencing
fruits
genome
crops
polymorphism
2014
39 Citations (Scopus)

A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms

Mathew, L. S., Spannagl, M., Al-Malki, A., George, B., Torres, M. F., Aldous, E., Al-Azwani, E. K., Hussein, E., Mathew, S., Mayer, K. F. X., Ali Mohamoud, Y., Suhre, K. & Malek, J., 15 Apr 2014, In : BMC Genomics. 15, 1, 285.

Research output: Contribution to journalArticle

Genome
Sex Chromosomes
Fruit
Extreme Heat
Synteny
28 Citations (Scopus)

Exome Sequencing Identifies Potential Risk Variants for Mendelian Disorders at High Prevalence in Qatar

Rodriguez-Flores, J. L., Fakhro, K., Hackett, N. R., Salit, J., Fuller, J., Agosto-Perez, F., Gharbiah, M., Malek, J. A., Zirie, M., Jayyousi, A., Badii, R., Al-Nabet Al-Marri, A., Chouchane, L., Stadler, D. J., Mezey, J. G. & Crystal, R. G., Jan 2014, In : Human Mutation. 35, 1, p. 105-116 12 p.

Research output: Contribution to journalArticle

Qatar
Exome
Population
Genome
Penetrance
1 Citation (Scopus)

Longitudinal study of recurrent metastatic melanoma cell lines underscores the individuality of cancer biology

Pos, Z., Spivey, T. L., Liu, H., Sommariva, M., Chen, J., Wunderlich, J. R., Parisi, G., Tomei, S., Ayotte, B. D., Stroncek, D. F., Malek, J., Robbins, P. F., Rivoltini, L., Maio, M., Chouchane, L., Wang, E. & Marincola, F. M., 2014, In : Journal of Investigative Dermatology. 134, 5, p. 1389-1396 8 p.

Research output: Contribution to journalArticle

Individuality
Longitudinal Studies
Melanoma
Cells
Cell Line
21 Citations (Scopus)

Mesenchymal cell interaction with ovarian cancer cells induces a background dependent pro-metastatic transcriptomic profile

Lis, R., Touboul, C., Halabi, N., Madduri, A. S., Querleu, D., Mezey, J., Malek, J., Suhre, K. & Tabrizi, A. R., 5 Mar 2014, In : Journal of Translational Medicine. 12, 1, 59.

Research output: Contribution to journalArticle

Cell Communication
Ovarian Neoplasms
Cells
Genes
Precision Medicine
12 Citations (Scopus)

Metabolomics of Ramadan fasting: An opportunity for the controlled study of physiological responses to food intake

Mathew, S., Krug, S., Skurk, T., Halama, A., Stank, A., Artati, A., Prehn, C., Malek, J., Kastenmüller, G., Römisch-Margl, W., Adamski, J., Hauner, H. & Suhre, K., 6 Jun 2014, In : Journal of Translational Medicine. 12, 1, 161.

Research output: Contribution to journalArticle

Metabolomics
Fasting
Eating
Meals
Biological Phenomena
7 Citations (Scopus)

Prevalence of the apolipoprotein e arg145cys dyslipidemia at-risk polymorphism in african-derived populations

Abou Ziki, M. D., Strulovici-Barel, Y., Hackett, N. R., Rodriguez-Flores, J. L., Mezey, J. G., Salit, J., Radisch, S., Hollmann, C., Chouchane, L., Malek, J., Zirie, M. A., Jayyuosi, A., Gotto, A. M. & Crystal, R., 15 Jan 2014, In : American Journal of Cardiology. 113, 2, p. 302-308 7 p.

Research output: Contribution to journalArticle

Apolipoproteins
Dyslipidemias
African Americans
Apolipoproteins E
Population
2013
22 Citations (Scopus)

TNRC9 downregulates BRCA1 expression and promotes breast cancer aggressiveness

Shan, J., DSouza, S. P., Bakhru, S., Al-Azwani, E. K., Ascierto, M. L., Konduru, S. S., Bedri, S., Kizhakayil, D., Aigha, I. I., Malek, J., Al-Bozom, I., Gehani, S., Furtado, S., Mathiowitz, E., Wang, E., Marincola, F. M. & Chouchane, L., 1 May 2013, In : Cancer Research. 73, 9, p. 2840-2849 10 p.

Research output: Contribution to journalArticle

Down-Regulation
Breast Neoplasms
Ovarian Neoplasms
Trinucleotide Repeats
Germ-Line Mutation
2012
39 Citations (Scopus)
Extraembryonic Membranes
Mesenchymal Stromal Cells
Placenta
Bone Regeneration
Membranes
20 Citations (Scopus)

DNA-based assays to distinguish date palm (arecaceae) gender

Al-Mahmoud, M. E., Aldous, E., Al-Azwani, E. K. & Malek, J., Jan 2012, In : American Journal of Botany. 99, 1

Research output: Contribution to journalArticle

Arecaceae
Phoenix dactylifera
gender
assay
DNA
15 Citations (Scopus)

Exome sequencing of only seven Qataris identifies potentially deleterious variants in the Qatari population.

Rodriguez-Flores, J. L., Fuller, J., Hackett, N. R., Salit, J., Malek, J. A., Al-Dous, E., Chouchane, L., Zirie, M., Jayoussi, A., Mahmoud, M. A., Crystal, R. G. & Mezey, J. G., 2012, In : PLoS One. 7, 11, e47614.

Research output: Contribution to journalArticle

Exome
Single Nucleotide Polymorphism
Health
Gene Frequency
gene frequency
18 Citations (Scopus)

Gene expression analysis of matched ovarian primary tumors and peritoneal metastasis

Malek, J., Martinez, A., Mery, E., Ferron, G., Huang, R., Raynaud, C. M., Jouve, E., Thiery, J. P., Querleu, D. & Tabrizi, A. R., 11 Jun 2012, In : Journal of Translational Medicine. 10, 1, 121.

Research output: Contribution to journalArticle

Gene expression
Ovarian Neoplasms
Tumors
Neoplasm Metastasis
Gene Expression
33 Citations (Scopus)

Mesenchymal cell interaction with ovarian cancer cells triggers pro-metastatic properties

Lis, R., Touboul, C., Raynaud, C. M., Malek, J., Suhre, K., Mirshahi, M. & Tabrizi, A. R., 30 May 2012, In : PLoS One. 7, 5, e38340.

Research output: Contribution to journalArticle

ovarian neoplasms
Cell Communication
Ovarian Neoplasms
Cells
cells
2011
35 Citations (Scopus)

Copy number variation analysis of matched ovarian primary tumors and peritoneal metastasis

Malek, J., Mery, E., Mahmoud, Y. A., Al-Azwani, E. K., Roger, L., Huang, R., Jouve, E., Lis, R., Thiery, J. P., Querleu, D. & Tabrizi, A. R., 14 Dec 2011, In : PLoS One. 6, 12, e28561.

Research output: Contribution to journalArticle

ovarian neoplasms
metastasis
Tumors
Neoplasm Metastasis
neoplasms
229 Citations (Scopus)

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)

Aldous, E., George, B., Al-Mahmoud, M. E., Al-Jaber, M. Y., Wang, H., Salameh, Y. M., Al-Azwani, E. K., Chaluvadi, S., Pontaroli, A. C., Debarry, J., Arondel, V., Ohlrogge, J., Saie, I. J., Suliman-Elmeer, K. M., Bennetzen, J. L., Kruegger, R. R. & Malek, J., Jun 2011, In : Nature Biotechnology. 29, 6, p. 521-527 7 p.

Research output: Contribution to journalArticle

Genomics
Genes
Genome
Northern Africa
Eastern Africa
63 Citations (Scopus)

Tumor associated mesenchymal stem cells protects ovarian cancer cells from hyperthermia through CXCL12

Lis, R., Touboul, C., Mirshahi, P., Ali, F., Mathew, S., Nolan, D. J., Maleki, M., Abdalla, S. A., Raynaud, C. M., Querleu, D., Al-Azwani, E., Malek, J., Mirshahi, M. & Tabrizi, A. R., 1 Feb 2011, In : International Journal of Cancer. 128, 3, p. 715-725 11 p.

Research output: Contribution to journalArticle

Mesenchymal Stromal Cells
Ovarian Neoplasms
Fever
Neoplasms
Bone Marrow
2009
113 Citations (Scopus)

ALLPATHS 2: Small genomes assembled accurately and with high continuity from short paired reads

MacCallum, I., Przybylski, D., Gnerre, S., Burton, J., Shlyakhter, I., Gnirke, A., Malek, J., McKernan, K., Ranade, S., Shea, T. P., Williams, L., Young, S., Nusbaum, C. & Jaffe, D. B., 1 Oct 2009, In : Genome Biology. 10, 10, 103.

Research output: Contribution to journalArticle

Microbial Genome
Base Composition
genome
Genome
Escherichia coli
365 Citations (Scopus)

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

McKernan, K. J., Peckham, H. E., Costa, G. L., McLaughlin, S. F., Fu, Y., Tsung, E. F., Clouser, C. R., Duncan, C., Ichikawa, J. K., Lee, C. C., Zhang, Z., Ranade, S. S., Dimalanta, E. T., Hyland, F. C., Sokolsky, T. D., Zhang, L., Sheridan, A., Fu, H., Hendrickson, C. L., Li, B. & 25 others, Kotler, L., Stuart, J. R., Malek, J., Manning, J. M., Antipova, A. A., Perez, D. S., Moore, M. P., Hayashibara, K. C., Lyons, M. R., Beaudoin, R. E., Coleman, B. E., Laptewicz, M. W., Sannicandro, A. E., Rhodes, M. D., Gottimukkala, R. K., Yang, S., Bafna, V., Bashir, A., MacBride, A., Alkan, C., Kidd, J. M., Eichler, E. E., Reese, M. G., De La Vega, F. M. & Blanchard, A. P., Sep 2009, In : Genome Research. 19, 9, p. 1527-1541 15 p.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
Human Genome
Single Nucleotide Polymorphism
Ligation
Clone Cells
2008
412 Citations (Scopus)

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

Valouev, A., Ichikawa, J., Tonthat, T., Stuart, J., Ranade, S., Peckham, H., Zeng, K., Malek, J., Costa, G., McKernan, K., Sidow, A., Fire, A. & Johnson, S. M., Jul 2008, In : Genome Research. 18, 7, p. 1051-1063 13 p.

Research output: Contribution to journalArticle

Nucleosomes
Chromatin
Caenorhabditis elegans
Genome
Oligonucleotides
197 Citations (Scopus)

Rapid whole-genome mutational profiling using next-generation sequencing technologies

Smith, D. R., Quinlan, A. R., Peckham, H. E., Makowsky, K., Tao, W., Woolf, B., Shen, L., Donahue, W. F., Tusneem, N., Stromberg, M. P., Stewart, D. A., Zhang, L., Ranade, S. S., Warner, J. B., Lee, C. C., Coleman, B. E., Zhang, Z., McLaughlin, S. F., Malek, J., Sorenson, J. M. & 9 others, Blanchard, A. P., Chapman, J., Hillman, D., Chen, F., Rokhsar, D. S., McKernan, K. J., Jeffries, T. W., Marth, G. T. & Richardson, P. M., Oct 2008, In : Genome Research. 18, 10, p. 1638-1642 5 p.

Research output: Contribution to journalArticle

Genome
Technology
Mutation
Genetic Transformation
Metabolic Engineering
2007
131 Citations (Scopus)

The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri

Miller, W. G., Parker, C. T., Rubenfield, M., Mendz, G. L., Wösten, M. M. S. M., Ussery, D. W., Stolz, J. F., Binnewies, T. T., Hallin, P. F., Wang, G., Malek, J., Rogosin, A., Stanker, L. H. & Mandrell, R. E., 26 Dec 2007, In : PLoS One. 2, 12, e1358.

Research output: Contribution to journalArticle

Epsilonproteobacteria
Arcobacter
Arcobacter butzleri
epsilon-Proteobacteria
Sequence Analysis
2006
276 Citations (Scopus)

Sequencing genomes from single cells by polymerase cloning

Zhang, K., Martiny, A. C., Reppas, N. B., Barry, K. W., Malek, J., Chisholm, S. W. & Church, G. M., Jun 2006, In : Nature Biotechnology. 24, 6, p. 680-686 7 p.

Research output: Contribution to journalArticle

Cloning
Organism Cloning
Clone Cells
Genes
Genome
2004
171 Citations (Scopus)

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes

Seshadri, R., Myers, G. S. A., Tettelin, H., Eisen, J. A., Heidelberg, J. F., Dodson, R. J., Davidsen, T. M., DeBoy, R. T., Fouts, D. E., Haft, D. H., Selengut, J., Ren, Q., Brinkac, L. M., Madupu, R., Kolonay, J., Durkin, S. A., Daugherty, S. C., Shetty, J., Shvartsbeyn, A., Gebregeorgis, E. & 19 others, Geer, K., Tsegaye, G., Malek, J., Ayodeji, B., Shatsman, S., McLeod, M. P., Šmajs, D., Howell, J. K., Pal, S., Amin, A., Vashisth, P., McNeill, T. Z., Xiang, Q., Sodergren, E., Baca, E., Weinstock, G. M., Norris, S. J., Fraser, C. M. & Paulsen, I. T., 13 Apr 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 15, p. 5646-5651 6 p.

Research output: Contribution to journalArticle

Treponema denticola
Spirochaetales
Genome
Horizontal Gene Transfer
Genes
35 Citations (Scopus)

Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica

Malek, J., Wierzbowski, J. M., Tao, W., Bosak, S. A., Saranga, D. J., Doucette-Stamm, L., Smith, D. R., McEwan, P. J. & McKernan, K. J., 2004, In : Nucleic Acids Research. 32, 3, p. 1059-1064 6 p.

Research output: Contribution to journalArticle

Protein Interaction Mapping
Rickettsia
Firearms
Virulence
Genome
369 Citations (Scopus)

The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)

Gerhard, D. S., Wagner, L., Feingold, E. A., Shenmen, C. M., Grouse, L. H., Schuler, G., Klein, S. L., Old, S., Rasooly, R., Good, P., Guyer, M., Peck, A. M., Derge, J. G., Lipman, D., Collins, F. S., Jang, W., Sherry, S., Feolo, M., Misquitta, L., Lee, E. & 95 others, Rotmistrovsky, K., Greenhut, S. F., Schaefer, C. F., Buetow, K. H., Bonner, T. I., Haussler, D., Kent, J., Diekhans, M., Furey, T., Brent, M., Prange, C., Schreiber, K., Shapiro, N., Bhat, N. K., Hopkins, R. F., Hsie, F., Driscoll, T., Soares, M. B., Bonaldo, M. F., Casavant, T. L., Scheetz, T. E., Brownstein, M. J., Usdin, T. B., Toshiyuki, S., Carninci, P., Piao, Y., Dudekula, D. B., Ko, M. S. H., Kawakami, K., Suzuki, Y., Sugano, S., Gruber, C. E., Smith, M. R., Simmons, B., Moore, T., Waterman, R., Johnson, S. L., Ruan, Y., Lin Wei, C., Mathavan, S., Gunaratne, P. H., Wu, J., Garcia, A. M., Hulyk, S. W., Fuh, E., Yuan, Y., Sneed, A., Kowis, C., Hodgson, A., Muzny, D. M., McPherson, J., Gibbs, R. A., Fahey, J., Helton, E., Ketteman, M., Madan, A., Rodrigues, S., Sanchez, A., Whiting, M., Madan, A., Young, A. C., Wetherby, K. D., Granite, S. J., Kwong, P. N., Brinkley, C. P., Pearson, R. L., Bouffard, G. G., Blakesly, R. W., Green, E. D., Dickson, M. C., Rodriguez, A. C., Grimwood, J., Schmutz, J., Myers, R. M., Butterfield, Y. S. N., Griffith, M., Griffith, O. L., Krzywinski, M. I., Liao, N., Morrin, R., Palmquist, D., Petrescu, A. S., Skalska, U., Smailus, D. E., Stott, J. M., Schnerch, A., Schein, J. E., Jones, S. J. M., Holt, R. A., Baross, A., Marra, M. A., Clifton, S., Makowski, K. A., Bosak, S. & Malek, J., Oct 2004, In : Genome Research. 14, 10 B, p. 2121-2127 7 p.

Research output: Contribution to journalArticle

Complementary DNA
Clone Cells
Genes
Open Reading Frames
RNA-Directed DNA Polymerase
2003
1 Citation (Scopus)

Annotation of novel proteins utilizing a functional genome shotgun coupled with high-throughput protein interaction mapping

Malek, J., Wierzbowski, J. M., Dasch, G. A., Eremeva, M. E., McEwan, P. J. & McKernan, K. J., 2003, In : Cold Spring Harbor Symposia on Quantitative Biology. 68, p. 331-334 4 p.

Research output: Contribution to journalArticle

Genes
Throughput
Proteins
15 Citations (Scopus)

Radiation hybrid map, physical map, and low-pass genomic sequence of the canine prcd region on CFA9 and comparative mapping with the syntenic region on human chromosome 17

Sidjanin, D. J., Miller, B., Kijas, J., McElwee, J., Pillardy, J., Malek, J., Pai, G., Feldblyum, T., Fraser, C., Acland, G. & Aguirre, G., 1 Feb 2003, In : Genomics. 81, 2, p. 138-148 11 p.

Research output: Contribution to journalArticle

Radiation Hybrid Mapping
Chromosomes, Human, Pair 17
Human Chromosomes
Canidae
Synteny