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Research Output 1996 2019

2019
1 Citation (Scopus)

Alterations in long noncoding RNAs in women with and without polycystic ovarian syndrome

Butler, A. E., Hayat, S., Dargham, S. R., Malek, J. A., Abdulla, S. A., Mohamoud, Y. A., Suhre, K., Sathyapalan, T. & Atkin, S. L., 1 Jan 2019, (Accepted/In press) In : Clinical Endocrinology.

Research output: Contribution to journalArticle

Long Noncoding RNA
Polycystic Ovary Syndrome
Follicular Phase
Anti-Mullerian Hormone
Menstrual Cycle
Open Access
Epithelial-Mesenchymal Transition
cultured cells
Ovarian Neoplasms
inhibitors
Phosphotransferases

High-resolution protein–protein interaction mapping using all-versus-all sequencing (AVA-Seq)

Andrews, S. S., Ramadan, S., Al-Thani, N. M., Ahmed, I., Ali Mohamoud, Y. & Malek, J., 1 Jan 2019, In : Journal of Biological Chemistry. 294, 30, p. 11549-11558 10 p.

Research output: Contribution to journalArticle

Open Access
Hybrid systems
Proteins
Protein Interaction Mapping
Bacterial Transformation
Fusion reactions
Open Access
Genome
Population
Iraq
Chloroplast Genome
Mitochondrial Genome
2 Citations (Scopus)
Open Access
Phenotype
Neoplasms
Ovarian Neoplasms
Real-Time Polymerase Chain Reaction
Exons
2018
3 Citations (Scopus)

A comprehensive metabolomic data set of date palm fruit

Stephan, N., Halama, A., Mathew, S., Hayat, S., Bhagwat, A., Mathew, L. S., Diboun, I., Malek, J. & Suhre, K., 1 Jun 2018, In : Data in Brief. 18, p. 1313-1321 9 p.

Research output: Contribution to journalArticle

Phoenix dactylifera
metabolomics
dates (fruit)
fruits
biochemical pathways
document markup languages
maria
Phoenix (AZ)
HTML
sequencing

Exome sequencing-based identification of novel type 2 diabetes risk allele loci in the Qatari population

O’Beirne, S. L., Salit, J., Rodriguez-Flores, J. L., Staudt, M. R., Abi Khalil, C., Fakhro, K. A. M. A., Robay, A., Ramstetter, M. D., Malek, J., Zirie, M., Jayyousi, A., Badii, R., Al-Marri, A. A. N., Bener, A., Mahmoud, M., Chiuchiolo, M. J., Al-Shakaki, A., Chidiac, O., Stadler, D., Mezey, J. G. & 1 others, Crystal, R., 1 Sep 2018, In : PLoS One. 13, 9, e0199837.

Research output: Contribution to journalArticle

Exome
Medical problems
noninsulin-dependent diabetes mellitus
Type 2 Diabetes Mellitus
Alleles

Genotyping-by-sequencing identifies date palm clone preference in agronomics of the State of Qatar

Thareja, G., Mathew, S., Mathew, L. S., Ali Mohamoud, Y., Suhre, K. & Malek, J., 1 Dec 2018, In : PLoS One. 13, 12, e0207299.

Research output: Contribution to journalArticle

Qatar
Phoenix dactylifera
Fruits
genotyping
Clone Cells
7 Citations (Scopus)

Genus-wide sequencing supports a two-locus model for sex-determination in Phoenix

Torres, M. F., Mathew, L. S., Ahmed, I., Al Azwani, I., Krueger, R., Rivera-Nuñez, D., Ali Mohamoud, Y., Clark, A. G., Suhre, K. & Malek, J., 1 Dec 2018, In : Nature Communications. 9, 1, 3969.

Research output: Contribution to journalArticle

Phoenix (AZ)
sequencing
loci
Genes
genes
1 Citation (Scopus)

Metabolic changes of the blood metabolome after a date fruit challenge

Mathew, S., Halama, A., Abdul Kader, S., Choe, M., Mohney, R. P., Malek, J. & Suhre, K., 1 Oct 2018, In : Journal of Functional Foods. 49, p. 267-276 10 p.

Research output: Contribution to journalArticle

metabolome
Metabolome
dates (fruit)
metabolites
blood
5 Citations (Scopus)

Point-of-care whole-exome sequencing of idiopathic male infertility

Fakhro, K. A. M. A., Elbardisi, H., Arafa, M., Robay, A., Rodriguez-Flores, J. L., Al-Shakaki, A., Syed, N., Mezey, J. G., Abi Khalil, C., Malek, J., Al-Ansari, A., Al Said, S. & Crystal, R., 1 Nov 2018, In : Genetics in Medicine. 20, 11, p. 1365-1373 9 p.

Research output: Contribution to journalArticle

Point-of-Care Systems
Exome
Male Infertility
Genes
Middle East
10 Citations (Scopus)
Exome
sequencing
Quantitative Trait Loci
loci
Metabolites
2017
64 Citations (Scopus)

Connecting genetic risk to disease end points through the human blood plasma proteome

Suhre, K., Arnold, M., Bhagwat, A., Cotton, R. J., Engelke, R., Raffler, J., Sarwath, H., Thareja, G., Wahl, A., Delisle, R. K., Gold, L., Pezer, M., Lauc, G., Selim, M. A. E. D., Mook-Kanamori, D. O., Aldous, E., Ali Mohamoud, Y., Malek, J., Strauch, K., Grallert, H. & 4 others, Peters, A., Kastenmüller, G., Gieger, C. & Graumann, J., 27 Feb 2017, In : Nature Communications. 8, 14357.

Research output: Contribution to journalArticle

proteome
blood plasma
genome
Genome-Wide Association Study
Proteome
1 Citation (Scopus)

Erratum: Connecting genetic risk to disease end points through the human blood plasma proteome

Suhre, K., Arnold, M., Bhagwat, A., Cotton, R. J., Engelke, R., Raffler, J., Sarwath, H., Thareja, G., Wahl, A., DeLisle, R. K., Gold, L., Pezer, M., Lauc, G., El-Din Selim, M. A., Mook-Kanamori, D. O., Aldous, E., Ali Mohamoud, Y., Malek, J., Strauch, K., Grallert, H. & 4 others, Peters, A., Kastenmüller, G., Gieger, C. & Graumann, J., 11 Apr 2017, In : Nature Communications. 8, 1 p.

Research output: Contribution to journalArticle

proteome
blood plasma
Proteome
Blood
Plasmas
17 Citations (Scopus)

Mutation in noncoding RNA RNU12 causes early onset cerebellar ataxia

Elsaid, M. F., Chalhoub, N., Ben-Omran, T., Kumar, P., Kamel, H., Ibrahim, K., Ali Mohamoud, Y., Aldous, E., Al Azwani, I., Malek, J., Suhre, K., Ross, M. E. & Kamal Abd El Aleem, A., 1 Jan 2017, In : Annals of Neurology. 81, 1, p. 68-78 11 p.

Research output: Contribution to journalArticle

Spinocerebellar Degenerations
Untranslated RNA
Genome
Spliceosomes
Mutation
2016
69 Citations (Scopus)
Carcinoma
Ovarian Neoplasms
Messenger RNA
Neoplasms
RNA

Correction: Type 2 diabetes risk allele loci in the Qatari population (PLoS ONE (2016) 11:7 (e0156834) DOI: 10.1371/journal.pone.0156834)

O'Beirne, S. L., Salit, J., Rodriguez-Flores, J. L., Staudt, M. R., Khalil, C. A., Fakhro, K. A., Robay, A., Ramstetter, M. D., Al-Azwani, I. K., Malek, J. A., Zirie, M., Jayyousi, A., Badii, R., Al-Marri, A. A. N., Chiuchiolo, M. J., Al-Shakaki, A., Chidiac, O., Gharbiah, M., Bener, A., Stadler, D. & 3 others, Hackett, N. R., Mezey, J. G. & Crystal, R. G., 1 Aug 2016, In : PLoS One. 11, 8, e0161910.

Research output: Contribution to journalComment/debate

e-mail
Electronic mail
Medical problems
noninsulin-dependent diabetes mellitus
Type 2 Diabetes Mellitus
34 Citations (Scopus)

Indigenous Arabs are descendants of the earliest split from ancient Eurasian populations

Rodriguez-Flores, J. L., Fakhro, K. A. M. A., Agosto-Perez, F., Ramstetter, M. D., Arbiza, L., Vincent, T. L., Robay, A., Malek, J., Suhre, K., Chouchane, L., Badii, R., Al-Marri, A. A. N., Abi Khalil, C., Zirie, M., Jayyousi, A., Salit, J., Keinan, A., Clark, A. G., Crystal, R. & Mezey, J. G., 1 Feb 2016, In : Genome Research. 26, 2, p. 151-162 12 p.

Research output: Contribution to journalArticle

Neanderthals
Genome
Population
Emigration and Immigration
Population Groups
5 Citations (Scopus)

Preferential Allele Expression Analysis Identifies Shared Germline and Somatic Driver Genes in Advanced Ovarian Cancer

Halabi, N., Martinez, A., Al-Farsi, H., Mery, E., Puydenus, L., Pujol, P., Khalak, H. G., McLurcan, C., Ferron, G., Querleu, D., Al Azwani, I., Aldous, E., Ali Mohamoud, Y., Malek, J. & Tabrizi, A. R., 2016, In : PLoS Genetics. 12, 1, e1005755.

Research output: Contribution to journalArticle

ovarian neoplasms
Ovarian Neoplasms
cancer
germ cells
allele
26 Citations (Scopus)

The Qatar genome: A population-specific tool for precision medicine in the Middle East

Fakhro, K. A. M. A., Staudt, M. R., Ramstetter, M. D., Robay, A., Malek, J., Badii, R., Al-Marri, A. A. N., Abi Khalil, C., Al-Shakaki, A., Chidiac, O., Stadler, D., Zirie, M., Jayyousi, A., Salit, J., Mezey, J. G., Crystal, R. & Rodriguez-Flores, J. L., 30 Jun 2016, In : Human Genome Variation. 3, 16016.

Research output: Contribution to journalArticle

Open Access
Qatar
Precision Medicine
Middle East
Medicine
Genes
9 Citations (Scopus)

Type 2 diabetes risk allele loci in the Qatari population

O'Beirne, S. L., Salit, J., Rodriguez-Flores, J. L., Staudt, M. R., Abi Khalil, C., Fakhro, K. A. M. A., Robay, A., Ramstetter, M. D., Al Azwani, I., Malek, J., Zirie, M., Jayyousi, A., Badii, R., Al-Nabet Al-marri, A., Chiuchiolo, M. J., Al-Shakaki, A., Chidiac, O., Gharbiah, M., Bener, A., Stadler, D. & 3 others, Hackett, N. R., Mezey, J. G. & Crystal, R., 1 Jul 2016, In : PLoS One. 11, 7, e0156834.

Research output: Contribution to journalArticle

Medical problems
noninsulin-dependent diabetes mellitus
Type 2 Diabetes Mellitus
Alleles
Polymorphism
2015
19 Citations (Scopus)

A genome-wide survey of date palm cultivars supports two major subpopulations in Phoenix dactylifera

Mathew, L. S., Seidel, M. A., George, B., Mathew, S., Spannagl, M., Haberer, G., Torres, M. F., Aldous, E., Al-Azwani, E. K., Diboun, I., Krueger, R. R., Mayer, K. F. X., Ali Mohamoud, Y., Suhre, K. & Malek, J., 2015, In : G3: Genes, Genomes, Genetics. 5, 7, p. 1429-1438 10 p.

Research output: Contribution to journalArticle

Genome
Northern Africa
Single Nucleotide Polymorphism
Civilization
Western Africa
3 Citations (Scopus)

Copy number variations in the genome of the Qatari population

Fakhro, K. A. M. A., Yousri, N., Rodriguez-Flores, J. L., Robay, A., Staudt, M. R., Agosto-Perez, F., Salit, J., Malek, J., Suhre, K., Jayyousi, A., Zirie, M., Stadler, D., Mezey, J. G. & Crystal, R., 22 Oct 2015, In : BMC Genomics. 16, 1, 834.

Research output: Contribution to journalArticle

Genome
Population
Single Nucleotide Polymorphism
Chromosome Disorders
Databases
9 Citations (Scopus)

Metabolomics of dates (Phoenix dactylifera) reveals a highly dynamic ripening process accounting for major variation in fruit composition

Diboun, I., Mathew, S., Al-Rayyashi, M., Elrayess, M., Torres, M., Halama, A., Méret, M., Mohney, R. P., Karoly, E. D., Malek, J. & Suhre, K., 16 Dec 2015, In : BMC Plant Biology. 15, 1, 291.

Research output: Contribution to journalArticle

fruit composition
Phoenix dactylifera
metabolomics
ripening
metabolome
50 Citations (Scopus)

Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop

Hazzouri, K. M., Flowers, J. M., Visser, H. J., Khierallah, H. S. M., Rosas, U., Pham, G. M., Meyer, R. S., Johansen, C. K., Fresquez, Z. A., Masmoudi, K., Haider, N., El Kadri, N., Idaghdour, Y., Malek, J., Thirkhill, D., Markhand, G. S., Krueger, R. R., Zaid, A. & Purugganan, M. D., 9 Nov 2015, In : Nature Communications. 6, 8824.

Research output: Contribution to journalArticle

sequencing
fruits
genome
crops
polymorphism
2014
39 Citations (Scopus)

A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms

Mathew, L. S., Spannagl, M., Al-Malki, A., George, B., Torres, M. F., Aldous, E., Al-Azwani, E. K., Hussein, E., Mathew, S., Mayer, K. F. X., Ali Mohamoud, Y., Suhre, K. & Malek, J., 15 Apr 2014, In : BMC Genomics. 15, 1, 285.

Research output: Contribution to journalArticle

Genome
Sex Chromosomes
Fruit
Extreme Heat
Synteny
28 Citations (Scopus)

Exome Sequencing Identifies Potential Risk Variants for Mendelian Disorders at High Prevalence in Qatar

Rodriguez-Flores, J. L., Fakhro, K., Hackett, N. R., Salit, J., Fuller, J., Agosto-Perez, F., Gharbiah, M., Malek, J. A., Zirie, M., Jayyousi, A., Badii, R., Al-Nabet Al-Marri, A., Chouchane, L., Stadler, D. J., Mezey, J. G. & Crystal, R. G., Jan 2014, In : Human Mutation. 35, 1, p. 105-116 12 p.

Research output: Contribution to journalArticle

Qatar
Exome
Population
Genome
Penetrance
1 Citation (Scopus)

Longitudinal study of recurrent metastatic melanoma cell lines underscores the individuality of cancer biology

Pos, Z., Spivey, T. L., Liu, H., Sommariva, M., Chen, J., Wunderlich, J. R., Parisi, G., Tomei, S., Ayotte, B. D., Stroncek, D. F., Malek, J., Robbins, P. F., Rivoltini, L., Maio, M., Chouchane, L., Wang, E. & Marincola, F. M., 2014, In : Journal of Investigative Dermatology. 134, 5, p. 1389-1396 8 p.

Research output: Contribution to journalArticle

Individuality
Longitudinal Studies
Melanoma
Cells
Cell Line
21 Citations (Scopus)

Mesenchymal cell interaction with ovarian cancer cells induces a background dependent pro-metastatic transcriptomic profile

Lis, R., Touboul, C., Halabi, N., Madduri, A. S., Querleu, D., Mezey, J., Malek, J., Suhre, K. & Tabrizi, A. R., 5 Mar 2014, In : Journal of Translational Medicine. 12, 1, 59.

Research output: Contribution to journalArticle

Cell Communication
Ovarian Neoplasms
Cells
Genes
Precision Medicine
12 Citations (Scopus)

Metabolomics of Ramadan fasting: An opportunity for the controlled study of physiological responses to food intake

Mathew, S., Krug, S., Skurk, T., Halama, A., Stank, A., Artati, A., Prehn, C., Malek, J., Kastenmüller, G., Römisch-Margl, W., Adamski, J., Hauner, H. & Suhre, K., 6 Jun 2014, In : Journal of Translational Medicine. 12, 1, 161.

Research output: Contribution to journalArticle

Metabolomics
Fasting
Eating
Meals
Biological Phenomena
7 Citations (Scopus)

Prevalence of the apolipoprotein e arg145cys dyslipidemia at-risk polymorphism in african-derived populations

Abou Ziki, M. D., Strulovici-Barel, Y., Hackett, N. R., Rodriguez-Flores, J. L., Mezey, J. G., Salit, J., Radisch, S., Hollmann, C., Chouchane, L., Malek, J., Zirie, M. A., Jayyuosi, A., Gotto, A. M. & Crystal, R., 15 Jan 2014, In : American Journal of Cardiology. 113, 2, p. 302-308 7 p.

Research output: Contribution to journalArticle

Apolipoproteins
Dyslipidemias
African Americans
Apolipoproteins E
Population
11 Citations (Scopus)

Where cancer genomics should go next: A clinician's perspective

Tabrizi, A. R., Touboul, C., Al Thani, H., Suhre, K. & Malek, J., 2014, In : Human Molecular Genetics. 23, R1

Research output: Contribution to journalReview article

Genomics
Neoplasms
Colonic Neoplasms
Precision Medicine
Atlases
6 Citations (Scopus)

Whole genome sequencing identifies a novel occludin mutation in microcephaly with band-like calcification and polymicrogyria that extends the phenotypic spectrum

Elsaid, M. F., Kamel, H., Chalhoub, N., Aziz, N. A., Ibrahim, K., Ben-Omran, T., George, B., Aldous, E., Ali Mohamoud, Y., Malek, J., Ross, M. E. & Kamal Abd El Aleem, A., 2014, In : American Journal of Medical Genetics, Part A. 164, 6, p. 1614-1617 4 p.

Research output: Contribution to journalLetter

Occludin
Consanguinity
Malformations of Cortical Development
Calcinosis
Microcephaly
2013
22 Citations (Scopus)

TNRC9 downregulates BRCA1 expression and promotes breast cancer aggressiveness

Shan, J., DSouza, S. P., Bakhru, S., Al-Azwani, E. K., Ascierto, M. L., Konduru, S. S., Bedri, S., Kizhakayil, D., Aigha, I. I., Malek, J., Al-Bozom, I., Gehani, S., Furtado, S., Mathiowitz, E., Wang, E., Marincola, F. M. & Chouchane, L., 1 May 2013, In : Cancer Research. 73, 9, p. 2840-2849 10 p.

Research output: Contribution to journalArticle

Down-Regulation
Breast Neoplasms
Ovarian Neoplasms
Trinucleotide Repeats
Germ-Line Mutation
2012
39 Citations (Scopus)
Extraembryonic Membranes
Mesenchymal Stromal Cells
Placenta
Bone Regeneration
Membranes
20 Citations (Scopus)

DNA-based assays to distinguish date palm (arecaceae) gender

Al-Mahmoud, M. E., Aldous, E., Al-Azwani, E. K. & Malek, J., Jan 2012, In : American Journal of Botany. 99, 1

Research output: Contribution to journalArticle

Arecaceae
Phoenix dactylifera
gender
assay
DNA
15 Citations (Scopus)

Exome sequencing of only seven Qataris identifies potentially deleterious variants in the Qatari population.

Rodriguez-Flores, J. L., Fuller, J., Hackett, N. R., Salit, J., Malek, J. A., Al-Dous, E., Chouchane, L., Zirie, M., Jayoussi, A., Mahmoud, M. A., Crystal, R. G. & Mezey, J. G., 2012, In : PLoS One. 7, 11, e47614.

Research output: Contribution to journalArticle

Exome
Single Nucleotide Polymorphism
Health
Gene Frequency
gene frequency
18 Citations (Scopus)

Gene expression analysis of matched ovarian primary tumors and peritoneal metastasis

Malek, J., Martinez, A., Mery, E., Ferron, G., Huang, R., Raynaud, C. M., Jouve, E., Thiery, J. P., Querleu, D. & Tabrizi, A. R., 11 Jun 2012, In : Journal of Translational Medicine. 10, 1, 121.

Research output: Contribution to journalArticle

Gene expression
Ovarian Neoplasms
Tumors
Neoplasm Metastasis
Gene Expression
33 Citations (Scopus)

Mesenchymal cell interaction with ovarian cancer cells triggers pro-metastatic properties

Lis, R., Touboul, C., Raynaud, C. M., Malek, J., Suhre, K., Mirshahi, M. & Tabrizi, A. R., 30 May 2012, In : PLoS One. 7, 5, e38340.

Research output: Contribution to journalArticle

ovarian neoplasms
Cell Communication
Ovarian Neoplasms
Cells
cells
2011
35 Citations (Scopus)

Copy number variation analysis of matched ovarian primary tumors and peritoneal metastasis

Malek, J., Mery, E., Mahmoud, Y. A., Al-Azwani, E. K., Roger, L., Huang, R., Jouve, E., Lis, R., Thiery, J. P., Querleu, D. & Tabrizi, A. R., 14 Dec 2011, In : PLoS One. 6, 12, e28561.

Research output: Contribution to journalArticle

ovarian neoplasms
metastasis
Tumors
Neoplasm Metastasis
neoplasms
229 Citations (Scopus)

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)

Aldous, E., George, B., Al-Mahmoud, M. E., Al-Jaber, M. Y., Wang, H., Salameh, Y. M., Al-Azwani, E. K., Chaluvadi, S., Pontaroli, A. C., Debarry, J., Arondel, V., Ohlrogge, J., Saie, I. J., Suliman-Elmeer, K. M., Bennetzen, J. L., Kruegger, R. R. & Malek, J., Jun 2011, In : Nature Biotechnology. 29, 6, p. 521-527 7 p.

Research output: Contribution to journalArticle

Genomics
Genes
Genome
Northern Africa
Eastern Africa
63 Citations (Scopus)

Tumor associated mesenchymal stem cells protects ovarian cancer cells from hyperthermia through CXCL12

Lis, R., Touboul, C., Mirshahi, P., Ali, F., Mathew, S., Nolan, D. J., Maleki, M., Abdalla, S. A., Raynaud, C. M., Querleu, D., Al-Azwani, E., Malek, J., Mirshahi, M. & Tabrizi, A. R., 1 Feb 2011, In : International Journal of Cancer. 128, 3, p. 715-725 11 p.

Research output: Contribution to journalArticle

Mesenchymal Stromal Cells
Ovarian Neoplasms
Fever
Neoplasms
Bone Marrow
2010
12 Citations (Scopus)

Development of 1000 microsatellite markers across the date palm (Phoenix dactylifera L.) genome

Hamwieh, A., Farah, J., Moussally, S., Al-Sham'Aa, K., Almer, K., Khierallah, H., Udupa, S., Lababidi, S., Malek, J., Aaouine, M. & Baum, M., 3 Dec 2010, IV International Date Palm Conference. Vol. 882. p. 269-277 9 p. (Acta Horticulturae; vol. 882).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Phoenix dactylifera
microsatellite repeats
genome
nucleotides
Qatar
8 Citations (Scopus)

Next generation DNA sequencing applied to the date palm tree (Phoenix dactylifera)

Malek, J., 3 Dec 2010, IV International Date Palm Conference. Vol. 882. p. 249-252 4 p. (Acta Horticulturae; vol. 882).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Phoenix dactylifera
Arecaceae
sequence analysis
agriculture
fruits
2009
113 Citations (Scopus)

ALLPATHS 2: Small genomes assembled accurately and with high continuity from short paired reads

MacCallum, I., Przybylski, D., Gnerre, S., Burton, J., Shlyakhter, I., Gnirke, A., Malek, J., McKernan, K., Ranade, S., Shea, T. P., Williams, L., Young, S., Nusbaum, C. & Jaffe, D. B., 1 Oct 2009, In : Genome Biology. 10, 10, 103.

Research output: Contribution to journalArticle

Microbial Genome
Base Composition
genome
Genome
Escherichia coli
365 Citations (Scopus)

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

McKernan, K. J., Peckham, H. E., Costa, G. L., McLaughlin, S. F., Fu, Y., Tsung, E. F., Clouser, C. R., Duncan, C., Ichikawa, J. K., Lee, C. C., Zhang, Z., Ranade, S. S., Dimalanta, E. T., Hyland, F. C., Sokolsky, T. D., Zhang, L., Sheridan, A., Fu, H., Hendrickson, C. L., Li, B. & 25 others, Kotler, L., Stuart, J. R., Malek, J., Manning, J. M., Antipova, A. A., Perez, D. S., Moore, M. P., Hayashibara, K. C., Lyons, M. R., Beaudoin, R. E., Coleman, B. E., Laptewicz, M. W., Sannicandro, A. E., Rhodes, M. D., Gottimukkala, R. K., Yang, S., Bafna, V., Bashir, A., MacBride, A., Alkan, C., Kidd, J. M., Eichler, E. E., Reese, M. G., De La Vega, F. M. & Blanchard, A. P., Sep 2009, In : Genome Research. 19, 9, p. 1527-1541 15 p.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
Human Genome
Single Nucleotide Polymorphism
Ligation
Clone Cells
2008
412 Citations (Scopus)

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

Valouev, A., Ichikawa, J., Tonthat, T., Stuart, J., Ranade, S., Peckham, H., Zeng, K., Malek, J., Costa, G., McKernan, K., Sidow, A., Fire, A. & Johnson, S. M., Jul 2008, In : Genome Research. 18, 7, p. 1051-1063 13 p.

Research output: Contribution to journalArticle

Nucleosomes
Chromatin
Caenorhabditis elegans
Genome
Oligonucleotides
197 Citations (Scopus)

Rapid whole-genome mutational profiling using next-generation sequencing technologies

Smith, D. R., Quinlan, A. R., Peckham, H. E., Makowsky, K., Tao, W., Woolf, B., Shen, L., Donahue, W. F., Tusneem, N., Stromberg, M. P., Stewart, D. A., Zhang, L., Ranade, S. S., Warner, J. B., Lee, C. C., Coleman, B. E., Zhang, Z., McLaughlin, S. F., Malek, J., Sorenson, J. M. & 9 others, Blanchard, A. P., Chapman, J., Hillman, D., Chen, F., Rokhsar, D. S., McKernan, K. J., Jeffries, T. W., Marth, G. T. & Richardson, P. M., Oct 2008, In : Genome Research. 18, 10, p. 1638-1642 5 p.

Research output: Contribution to journalArticle

Genome
Technology
Mutation
Genetic Transformation
Metabolic Engineering
2007
131 Citations (Scopus)

The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri

Miller, W. G., Parker, C. T., Rubenfield, M., Mendz, G. L., Wösten, M. M. S. M., Ussery, D. W., Stolz, J. F., Binnewies, T. T., Hallin, P. F., Wang, G., Malek, J., Rogosin, A., Stanker, L. H. & Mandrell, R. E., 26 Dec 2007, In : PLoS One. 2, 12, e1358.

Research output: Contribution to journalArticle

Epsilonproteobacteria
Arcobacter
Arcobacter butzleri
epsilon-Proteobacteria
Sequence Analysis