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Research Output 1996 2019

  • 816 Citations
  • 14 h-Index
  • 35 Article
  • 18 Conference contribution
  • 3 Chapter
  • 2 Comment/debate
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Conference contribution
2019
1 Citation (Scopus)

DeepCrystal: A Deep Learning Framework for Sequence-based Protein Crystallization Prediction

Elbasir, A., Moovarkumudalvan, B., Kunji, K., Kolatkar, P., Bensmail, H. & Mall, R., 21 Jan 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2747-2749 3 p. 8621202. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Crystallization
Learning
Proteins
Diffraction
Crystals
2018

ISaaC: Identifying structural relations in biological data with copula-based kernel dependency measures

Al Meer, H., Mall, R., Ullah, E., Megrez, N. & Bensmail, H., 1 Jan 2018, Bioinformatics and Biomedical Engineering - 6th International Work-Conference, IWBBIO 2018, Proceedings. Springer Verlag, p. 71-82 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10813 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Copula
Genes
kernel
Reverse engineering
Reverse Engineering
3 Citations (Scopus)

Microbiomarkers Discovery in Inflammatory Bowel Diseases using Network-Based Feature Selection

Abbas, M., Le, T., Bensmail, H., Honavar, V. & El-Manzalawy, Y., 15 Aug 2018, ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 172-177 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomarkers
Inflammatory Bowel Diseases
Feature extraction
Metagenomics
Phenotype
2017

Advanced computation of sparse precision matrices for big data

Baggag, A., Bensmail, H. & Srivastava, J., 1 Jan 2017, Advances in Knowledge Discovery and Data Mining - 21st Pacific-Asia Conference, PAKDD 2017, Proceedings. Springer Verlag, p. 27-38 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10235 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Covariance matrix
Method of multipliers
Alternating Direction Method
Positive Definiteness
Stopping Criterion
1 Citation (Scopus)

An adaptive refinement for community detection methods for disease module identification in biological networks using novel metric based on connectivity, conductance & modularity

Mall, R., Ullah, E., Kunji, K., Bensmail, H. & Ceccarelli, M., 15 Dec 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January. p. 2282-2284 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Benchmarking
Genes
Genome-Wide Association Study
Merging
Biomedical Research
1 Citation (Scopus)

Differential community detection in paired biological networks

Mall, R., D'Angelo, F., Ullah, E., Bensmail, H., Kunji, K. & Ceccarelli, M., 20 Aug 2017, ACM-BCB 2017 - Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 330-339 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Methylation
Molecular interactions
Electric wiring
Gene expression

Identification of cancer drug sensitivity biomarkers

Ullah, E., Mall, R., Bensmail, H., Rawi, R., Shama, S., Muftah, N. A. & Thmpson, I. R., 15 Dec 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January. p. 2322-2324 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomarkers
Cells
Gene expression
Pharmaceutical Preparations
Medicine
1 Citation (Scopus)

Metabolomic Data Profiling for Diabetes Research in Qatar

Mall, R., Berti-Equille, L. & Bensmail, H., 12 Jan 2017, Proceedings - 27th International Workshop on Database and Expert Systems Applications, DEXA 2016. Institute of Electrical and Electronics Engineers Inc., p. 39-43 5 p. 7816621

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medical problems
Biomarkers
Metabolites
Nuclear magnetic resonance spectroscopy
Nuclear magnetic resonance
2016
1 Citation (Scopus)

A design study to identify inconsistencies in kinship information: The case of the 1000 Genomes project

Aupetit, M., Ullah, E., Rawi, R. & Bensmail, H., 4 May 2016, 2016 IEEE Pacific Visualization Symposium, PacificVis 2016 - Proceedings. IEEE Computer Society, Vol. 2016-May. p. 254-258 5 p. 7465281

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Data visualization
1 Citation (Scopus)

Denoised Kernel Spectral data Clustering

Mall, R., Bensmail, H., Langone, R., Varon, C. & Suykens, J. A. K., 31 Oct 2016, 2016 International Joint Conference on Neural Networks, IJCNN 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 3709-3716 8 p. 7727677

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Principal component analysis
Heuristic methods
Bandwidth
14 Citations (Scopus)

Supervised Cross-Modal Factor Analysis for Multiple Modal Data Classification

Wang, J., Zhou, Y., Duan, K., Wang, J. J. Y. & Bensmail, H., 12 Jan 2016, Proceedings - 2015 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2015. Institute of Electrical and Electronics Engineers Inc., p. 1882-1888 7 p. 7379461

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Factor analysis
Labels
Hinges
Objective function
Experiments
2015

Residue-residue contact prediction in the HIV-1 envelope glycoprotein complex

Rawi, R., Kunji, K., Haoudi, A. & Bensmail, H., 16 Dec 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 1709-1711 3 p. 7359933

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Glycoproteins
env Gene Products
HIV-1
Proteins
Fusion reactions
2014
3 Citations (Scopus)

COFADMM: A computational features selection with alternating Direction Method of Multipliers

El Anbari, M., Alam, S. & Bensmail, H., 2014, Procedia Computer Science. Elsevier, Vol. 29. p. 821-830 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Feature extraction
Convex optimization
Combinatorial optimization
Distributed computer systems
Explosions

Computational neuro-modeling of visual memory: Multimodal imaging and analysis

El Anbari, M., Nemmour, N., Bouhali, O., Rawi, R., Sheharyar, A. & Bensmail, H., 1 Jan 2014, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 8609 LNAI. p. 21-32 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8609 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Imaging
Imaging techniques
Data storage equipment
Functional Magnetic Resonance Imaging
Overfitting
3 Citations (Scopus)

Domain transfer nonnegative matrix factorization

Wang, J. J. Y., Sun, Y. & Bensmail, H., 1 Jan 2014, Proceedings of the International Joint Conference on Neural Networks. Institute of Electrical and Electronics Engineers Inc., p. 3605-3612 8 p. 6889428

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Factorization
Classifiers
Vector spaces
Labels
Learning algorithms
2013
2 Citations (Scopus)

Cross-domain sparse coding

Wang, J. J. Y. & Bensmail, H., 11 Dec 2013, International Conference on Information and Knowledge Management, Proceedings. p. 1461-1464 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spam
Oil
Discrepancy
Experiment
1 Citation (Scopus)

Metflexo: An automated simulation of realistic H1-NMR spectra

Atieh, Z., Suhre, K. & Bensmail, H., 2013, Procedia Computer Science. Elsevier, Vol. 18. p. 1382-1391 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Metabolites
Nuclear magnetic resonance
Magnetic fields
Deconvolution
Biological systems
2012

RAFNI: Robust analysis of functional neuroimages with non-normal α-stable error

Bensmail, H., Anjum, S., Bouhali, O. & El Anbari, M., 19 Nov 2012, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). PART 1 ed. Vol. 7663 LNCS. p. 624-631 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7663 LNCS, no. PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Functional Magnetic Resonance Imaging
Stable Distribution
Neuroscience
Neuroimaging
Fat Tails