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Research Output 2007 2018

  • 161 Citations
  • 7 h-Index
  • 11 Article
  • 1 Conference contribution
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Article
4 Citations (Scopus)

CAPRG: Sequence assembling pipeline for next generation sequencing of non-model organisms

Rawat, A., Elasri, M. O., Gust, K. A., George, G., Pham, D., Scanlan, L. D., Vulpe, C. & Perkins, E. J., 3 Feb 2012, In : PLoS One. 7, 2, e30370.

Research output: Contribution to journalArticle

Pipelines
Genes
Genome
genome
organisms
1 Citation (Scopus)

Coinfections identified from metagenomic analysis of cervical lymph nodes from tularemia patients

Birdsell, D. N., Özsürekci, Y., Rawat, A., Aycan, A. E., Mitchell, C. L., Sahl, J. W., Johansson, A., Colman, R. E., Schupp, J. M., Ceyhan, M., Keim, P. S. & Wagner, D. M., 11 Jul 2018, In : BMC Infectious Diseases. 18, 1, 319.

Research output: Contribution to journalArticle

Tularemia
Metagenomics
Coinfection
Firearms
Lymph Nodes
13 Citations (Scopus)

Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress

Gust, K. A., Najar, F. Z., Habib, T., Lotufo, G. R., Piggot, A. M., Fouke, B. W., Laird, J. G., Wilbanks, M. S., Rawat, A., Indest, K. J., Roe, B. A. & Perkins, E. J., 12 Jul 2014, In : BMC Genomics. 15, 1, 591.

Research output: Contribution to journalArticle

Anthozoa
Glycolysis
Electron Transport
Taiwan
Energy Metabolism
28 Citations (Scopus)

Depletion of human DNA in spiked clinical specimens for improvement of sensitivity of pathogen detection by next-generation sequencing

Hasan, M. R., Rawat, A., Tang, P., Jithesh, P. V., Thomas, E., Tan, R. & Tilley, P., 1 Apr 2016, In : Journal of Clinical Microbiology. 54, 4, p. 919-927 9 p.

Research output: Contribution to journalArticle

DNA
Metagenomics
Bacterial DNA
Deoxyribonucleases
Saponins
53 Citations (Scopus)

Differential effects and potential adverse outcomes of ionic silver and silver nanoparticles in vivo and in vitro

Garcia-Reyero, N., Kennedy, A. J., Escalon, B. L., Habib, T., Laird, J. G., Rawat, A., Wiseman, S., Hecker, M., Denslow, N., Steevens, J. A. & Perkins, E. J., 15 Apr 2014, In : Environmental Science and Technology. 48, 8, p. 4546-4555 10 p.

Research output: Contribution to journalArticle

Silver
silver
Nanoparticles
Assays
Cytoplasmic and Nuclear Receptors
23 Citations (Scopus)

From raw materials to validated system: The construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite

Rawat, A., Gust, K. A., Deng, Y., Garcia-Reyero, N., Quinn, M. J., Johnson, M. S., Indest, K. J., Elasri, M. O. & Perkins, E. J., Jul 2010, In : Physiological Genomics. 42, 2, p. 219-235 17 p.

Research output: Contribution to journalArticle

2,6-dinitrotoluene
Colinus
Genomic Library
Gene Ontology
Liver
8 Citations (Scopus)

MetaGeniE: Characterizing human clinical samples using deep metagenomic sequencing

Rawat, A., Engelthaler, D. M., Driebe, E. M., Keim, P. & Foster, J. T., 3 Nov 2014, In : PLoS One. 9, 11, e110915.

Research output: Contribution to journalArticle

Metagenome
High-Throughput Nucleotide Sequencing
Metagenomics
Pathogens
Genome

Multiple environmental stressors induce complex transcriptomic responses indicative of phenotypic outcomes in Western fence lizard

Gust, K. A., Chaitankar, V., Ghosh, P., Wilbanks, M. S., Chen, X., Barker, N. D., Pham, D., Scanlan, L. D., Rawat, A., Talent, L. G., Quinn, M. J., Vulpe, C. D., Elasri, M. O., Johnson, M. S., Perkins, E. J. & McFarland, C. A., 5 Dec 2018, In : BMC Genomics. 19, 1, 877.

Research output: Contribution to journalArticle

Trinitrotoluene
Lizards
Malaria
Food
Leukocytes
16 Citations (Scopus)

Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data

Rawat, A. & Deng, Y., 12 Aug 2008, In : BMC Bioinformatics. 9, SUPPL. 9, S7.

Research output: Contribution to journalArticle

Graph theory
Microarrays
Microarray Data
Genes
Gene
9 Citations (Scopus)

Quail Genomics: A knowledgebase for Northern bobwhite

Rawat, A., Gust, K. A., Elasri, M. O. & Perkins, E. J., 7 Oct 2010, In : BMC Bioinformatics. 11, SUPPL. 6, 13.

Research output: Contribution to journalArticle

Colinus
Quail
Knowledge Bases
Genomics
Knowledge Base
6 Citations (Scopus)

Systems toxicology identifies mechanistic impacts of 2-amino-4,6-dinitrotoluene (2A-DNT) exposure in Northern Bobwhite

Gust, K. A., Nanduri, B., Rawat, A., Wilbanks, M. S., Ang, C. Y., Johnson, D. R., Pendarvis, K., Chen, X., Quinn, M. J., Johnson, M. S., Burgess, S. C. & Perkins, E. J., 7 Aug 2015, In : BMC Genomics. 16, 1, 587.

Research output: Contribution to journalArticle

Colinus
Toxicology
Peroxisome Proliferator-Activated Receptors
Liver
Proteins