• 171 Citations
  • 7 h-Index
20072018

Research output per year

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Research Output

  • 171 Citations
  • 7 h-Index
  • 11 Article
  • 1 Conference contribution
2018

Coinfections identified from metagenomic analysis of cervical lymph nodes from tularemia patients

Birdsell, D. N., Özsürekci, Y., Rawat, A., Aycan, A. E., Mitchell, C. L., Sahl, J. W., Johansson, A., Colman, R. E., Schupp, J. M., Ceyhan, M., Keim, P. S. & Wagner, D. M., 11 Jul 2018, In : BMC Infectious Diseases. 18, 1, 319.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Multiple environmental stressors induce complex transcriptomic responses indicative of phenotypic outcomes in Western fence lizard

Gust, K. A., Chaitankar, V., Ghosh, P., Wilbanks, M. S., Chen, X., Barker, N. D., Pham, D., Scanlan, L. D., Rawat, A., Talent, L. G., Quinn, M. J., Vulpe, C. D., Elasri, M. O., Johnson, M. S., Perkins, E. J. & McFarland, C. A., 5 Dec 2018, In : BMC Genomics. 19, 1, 877.

Research output: Contribution to journalArticle

2016

Depletion of human DNA in spiked clinical specimens for improvement of sensitivity of pathogen detection by next-generation sequencing

Hasan, M. R., Rawat, A., Tang, P., Jithesh, P. V., Thomas, E., Tan, R. & Tilley, P., 1 Apr 2016, In : Journal of Clinical Microbiology. 54, 4, p. 919-927 9 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)
2015

Systems toxicology identifies mechanistic impacts of 2-amino-4,6-dinitrotoluene (2A-DNT) exposure in Northern Bobwhite

Gust, K. A., Nanduri, B., Rawat, A., Wilbanks, M. S., Ang, C. Y., Johnson, D. R., Pendarvis, K., Chen, X., Quinn, M. J., Johnson, M. S., Burgess, S. C. & Perkins, E. J., 7 Aug 2015, In : BMC genomics. 16, 1, 587.

Research output: Contribution to journalArticle

6 Citations (Scopus)
2014

Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress

Gust, K. A., Najar, F. Z., Habib, T., Lotufo, G. R., Piggot, A. M., Fouke, B. W., Laird, J. G., Wilbanks, M. S., Rawat, A., Indest, K. J., Roe, B. A. & Perkins, E. J., 12 Jul 2014, In : BMC Genomics. 15, 1, 591.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Differential effects and potential adverse outcomes of ionic silver and silver nanoparticles in vivo and in vitro

Garcia-Reyero, N., Kennedy, A. J., Escalon, B. L., Habib, T., Laird, J. G., Rawat, A., Wiseman, S., Hecker, M., Denslow, N., Steevens, J. A. & Perkins, E. J., 15 Apr 2014, In : Environmental Science and Technology. 48, 8, p. 4546-4555 10 p.

Research output: Contribution to journalArticle

57 Citations (Scopus)

MetaGeniE: Characterizing human clinical samples using deep metagenomic sequencing

Rawat, A., Engelthaler, D. M., Driebe, E. M., Keim, P. & Foster, J. T., 3 Nov 2014, In : PLoS One. 9, 11, e110915.

Research output: Contribution to journalArticle

8 Citations (Scopus)
2012

CAPRG: Sequence assembling pipeline for next generation sequencing of non-model organisms

Rawat, A., Elasri, M. O., Gust, K. A., George, G., Pham, D., Scanlan, L. D., Vulpe, C. & Perkins, E. J., 3 Feb 2012, In : PloS one. 7, 2, e30370.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2010

From raw materials to validated system: The construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite

Rawat, A., Gust, K. A., Deng, Y., Garcia-Reyero, N., Quinn, M. J., Johnson, M. S., Indest, K. J., Elasri, M. O. & Perkins, E. J., 1 Jul 2010, In : Physiological Genomics. 42, 2, p. 219-235 17 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Quail Genomics: A knowledgebase for Northern bobwhite

Rawat, A., Gust, K. A., Elasri, M. O. & Perkins, E. J., 7 Oct 2010, In : BMC bioinformatics. 11, SUPPL. 6, 13.

Research output: Contribution to journalArticle

9 Citations (Scopus)
2008

Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data

Rawat, A. & Deng, Y., 12 Aug 2008, In : BMC bioinformatics. 9, SUPPL. 9, S7.

Research output: Contribution to journalArticle

16 Citations (Scopus)
2007

An effective interwoven loop design application for two-channel microarray experiments

Pirooznia, M., Rawat, A., Yang, J. Y., Yang, M. Q., Gong, P., Perkins, E. J. & Deng, Y., 1 Dec 2007, Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE. p. 187-191 5 p. 4375563. (Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE).

Research output: Chapter in Book/Report/Conference proceedingConference contribution