Research Output

  • 812 Citations
  • 17 h-Index
  • 35 Article
  • 1 Chapter
2019

A Systems-level Characterization of the Differentiation of Human Embryonic Stem Cells into Mesenchymal Stem Cells

Billing, A., Dib, S., Bhagwat, A., da Silva, I. T., Drummond, R. D., Hayat, S., Al Mismar, R., Ben-Hamidane, H., Goswami, N., Engholm-Keller, K., Larsen, M. R., Suhre, K., Tabrizi, A. R. & Graumann, J., 1 Oct 2019, In : Molecular & cellular proteomics : MCP. 18, 10, p. 1950-1966 17 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Remodeling of ER-plasma membrane contact sites but not STIM1 phosphorylation inhibits Ca2+ influx in mitosis

Yu, F., Hubrack, S. Z., Chakraborty, S., Sun, L., Alcantara-Adap, E., Kulkarni, R., Billing, A., Graumann, J., Taylor, C. W. & Machaca, K., 1 Jan 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 21, p. 10392-10401 10 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)
2018

Accelerated lipid catabolism and autophagy are cancer survival mechanisms under inhibited glutaminolysis

Halama, A., Kulinski, M., Dib, S., Zaghlool, S., Siveen, K. S., Iskandarani, A., Zierer, J., Prabhu, K. S., Satheesh, N., Bhagwat, A., Uddin, S., Kastenmüller, G., Elemento, O., Gross, S. S. & Suhre, K., 28 Aug 2018, In : Cancer Letters. 430, p. 133-147 15 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)
2017

Complementarity of SOMAscan to LC-MS/MS and RNA-seq for quantitative profiling of human embryonic and mesenchymal stem cells

Billing, A., Ben Hamidane, H., Bhagwat, A., Cotton, R. J., Dib, S., Kumar, P., Hayat, S., Goswami, N., Suhre, K., Tabrizi, A. R. & Graumann, J., 6 Jan 2017, In : Journal of Proteomics. 150, p. 86-97 12 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Connecting genetic risk to disease end points through the human blood plasma proteome

Suhre, K., Arnold, M., Bhagwat, A., Cotton, R. J., Engelke, R., Raffler, J., Sarwath, H., Thareja, G., Wahl, A., Delisle, R. K., Gold, L., Pezer, M., Lauc, G., Selim, M. A. E. D., Mook-Kanamori, D. O., Aldous, E., Ali Mohamoud, Y., Malek, J., Strauch, K., Grallert, H. & 4 others, Peters, A., Kastenmüller, G., Gieger, C. & Graumann, J., 27 Feb 2017, In : Nature Communications. 8, 14357.

Research output: Contribution to journalArticle

76 Citations (Scopus)

EIF5A-PEAK1 signaling regulates YAP1/TAZ protein expression and pancreatic cancer cell growth

Strnadel, J., Choi, S., Fujimura, K., Wang, H., Zhang, W., Wyse, M., Wright, T., Gross, E., Peinado, C., Park, H. W., Bui, J., Kelber, J., Bouvet, M., Guan, K. L. & Klemke, R. L., 15 Apr 2017, In : Cancer Research. 77, 8, p. 1997-2007 11 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Erratum: Connecting genetic risk to disease end points through the human blood plasma proteome

Suhre, K., Arnold, M., Bhagwat, A., Cotton, R. J., Engelke, R., Raffler, J., Sarwath, H., Thareja, G., Wahl, A., DeLisle, R. K., Gold, L., Pezer, M., Lauc, G., El-Din Selim, M. A., Mook-Kanamori, D. O., Aldous, E., Ali Mohamoud, Y., Malek, J., Strauch, K., Grallert, H. & 4 others, Peters, A., Kastenmüller, G., Gieger, C. & Graumann, J., 11 Apr 2017, In : Nature Communications. 8, 1 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Introduction of p16INK4a as a surrogate biomarker for HPV in women with invasive cervical cancer in Sudan

Sarwath, H., Bansal, D., Husain, N. E., Mohamed, M., Sultan, A. & Bedri, S., 30 Sep 2017, In : Infectious Agents and Cancer. 12, 1, 50.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2016
44 Citations (Scopus)

SIRT1 limits adipocyte hyperplasia through c-Myc inhibition

Abdesselem, H., Madani, A., Hani, A., Al-Noubi, M., Goswami, N., Ben Hamidane, H., Billing, A., Pasquier, J., Bonkowski, M. S., Halabi, N., Dalloul, R., Sheriff, M. Z., Mesaeli, N., ElRayess, M., Sinclair, D. A., Graumann, J. & Mazloum, N., 29 Jan 2016, In : Journal of Biological Chemistry. 291, 5, p. 2119-2135 17 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)
2015

Eukaryotic translation initiation factor 5A (EIF5A) regulates pancreatic cancer metastasis by modulating RhoA and rho-associated kinase (ROCK) protein expression levels

Fujimura, K., Choi, S., Wyse, M., Strnadel, J., Wright, T. & Klemke, R., 11 Dec 2015, In : Journal of Biological Chemistry. 290, 50, p. 29907-29919 13 p.

Research output: Contribution to journalArticle

32 Citations (Scopus)

Foxp3 expression in breast cancer patient from Qatar: Survival analysis

Mohamed, M. G., Sarwath, H., Alqahtani, S., Bujjasoum, S., Mujeeb, I. B., Almesteri, M., Bugrein, H., Chandra, P. & Bedri, S., 1 Jan 2015, In : Journal for ImmunoTherapy of Cancer. 3, O2.

Research output: Contribution to journalArticle

MetaRNA-Seq: An interactive tool to browse and annotate metadata from RNA-Seq studies

Kumar, P., Halama, A., Hayat, S., Billing, A., Gupta, M., Yousri, N., Smith, G. M. & Suhre, K., 2015, In : BioMed Research International. 2015, 318064.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2014

Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver

Blanc, V., Park, E., Schaefer, S., Miller, M., Lin, Y., Kennedy, S., Billing, A. M., Hamidane, H. B., Graumann, J., Mortazavi, A., Nadeau, J. H. & Davidson, N. O., 19 Jun 2014, In : Genome biology. 15, 6, R79.

Research output: Contribution to journalArticle

48 Citations (Scopus)

Procedures for the biochemical enrichment and proteomic analysis of the cytoskeletome

Choi, S., Kelber, J., Jiang, X., Strnadel, J., Fujimura, K., Pasillas, M., Coppinger, J. & Klemke, R., 1 Feb 2014, In : Analytical Biochemistry. 446, 1, p. 102-107 6 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Proteome profiling of virus-host interactions of wild type and attenuated measles virus strains

Billing, A. M., Kessler, J. R., Revets, D., Sausy, A., Schmitz, S., Barra, C. & Muller, C. P., 28 Aug 2014, In : Journal of Proteomics. 108, p. 325-336 12 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2013

Adaptation of a commonly used, chemically defined medium for human embryonic stem cells to stable isotope labeling with amino acids in cell culture

Liberski, A. R., Al-Noubi, M. N., Rahman, Z. H., Halabi, N. M., Dib, S. S., Al-Mismar, R., Billing, A. M., Krishnankutty, R., Ahmad, F. S., Raynaud, C. M., Rafii, A., Engholm-Keller, K. & Graumann, J., 5 Jul 2013, In : Journal of Proteome Research. 12, 7, p. 3233-3245 13 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Functional interplay between Aurora B kinase and Ssu72 phosphatase regulates sister chromatid cohesion

Kim, H. S., Kim, S. H., Park, H. Y., Lee, J., Yoon, J. H., Choi, S., Ryu, S. H., Lee, H., Cho, H. S. & Lee, C. W., 23 Oct 2013, In : Nature communications. 4, 2631.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Membrane glucocorticoid receptor activation induces proteomic changes aligning with classical glucocorticoid effects

Vernocchi, S., Battello, N., Schmitz, S., Revets, D., Billing, A. M., Turner, J. D. & Muller, C. P., Jul 2013, In : Molecular and Cellular Proteomics. 12, 7, p. 1764-1779 16 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Quantitative pattern analysis of the N-terminally processed isoforms of platelet factor-4 in serum

Kim, J. Y., Lee, J. R., Choi, S., Kim, E. M., Jung, N. K., Kim, Y. H., Yoo, J. S. & Lee, S. W., 28 Feb 2013, In : Rapid Communications in Mass Spectrometry. 27, 4, p. 521-530 10 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Thymoquinone induces apoptosis in malignant T-cells via generation of ROS

Dergarabetian, E. M., Ghattass, K. I., El-Sitt, S. B., Al Mismar, R. M., El-Baba, C. O., Itani, W. S., Melhem, N. M., El-Hajj, H. A., Bazarbachi, A. A. H., Schneider-Stock, R. & Gali-Muhtasib, H. U., 1 Jan 2013, In : Frontiers in Bioscience - Elite. 5 E, 2, p. 706-719 14 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)
2012

Afamin secreted from nonresorbing osteoclasts acts as a chemokine for preosteoblasts via the Akt-signaling pathway

Kim, B. J., Lee, Y. S., Lee, S. Y., Park, S. Y., Dieplinger, H., Ryu, S. H., Yea, K., Choi, S., Lee, S. H., Koh, J. M. & Kim, G. S., 1 Sep 2012, In : Bone. 51, 3, p. 431-440 10 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

A novel method for the simultaneous enrichment, identification, and quantification of phosphopeptides and sialylated glycopeptides applied to a temporal profile of mouse brain development

Palmisano, G., Parker, B. L., Engholm-Keller, K., Lendal, S. E., Kulej, K., Schulz, M., Schwämmle, V., Graham, M. E., Saxtorph, H., Cordwell, S. J. & Larsen, M. R., 1 Nov 2012, In : Molecular and Cellular Proteomics. 11, 11, p. 1191-1202 12 p.

Research output: Contribution to journalArticle

75 Citations (Scopus)

Identification of differentially expressed proteins in curcumin-treated prostate cancer cell lines

Teiten, M. H., Gaigneaux, A., Chateauvieux, S., Billing, A. M., Planchon, S., Fack, F., Renaut, J., Mack, F., Muller, C. P., Dicato, M. & Diederich, M., 1 Jun 2012, In : OMICS A Journal of Integrative Biology. 16, 6, p. 289-300 12 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Osmotic stress regulates mammalian target of rapamycin (mTOR) complex 1 via c-Jun N-terminal kinase (JNK)-mediated raptor protein phosphorylation

Kwak, D., Choi, S., Jeong, H., Jang, J. H., Lee, Y., Jeon, H., Lee, M. N., Noh, J., Cho, K., Yoo, J. S., Hwang, D., Suh, P. G. & Ryu, S. H., 25 May 2012, In : Journal of Biological Chemistry. 287, 22, p. 18398-18407 10 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)

Proteomic profiling of rapid non-genomic and concomitant genomic effects of acute restraint stress on rat thymocytes

Billing, A. M., Revets, D., Hoffmann, C., Turner, J. D., Vernocchi, S. & Muller, C. P., 3 Apr 2012, In : Journal of Proteomics. 75, 7, p. 2064-2079 16 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)
2011

Cortisol is a potent modulator of lipopolysaccharide-induced interferon signaling in macrophages

Billing, A. M., Fack, F., Turner, J. D. & Muller, C. P., Jun 2011, In : Innate Immunity. 17, 3, p. 302-320 19 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Proteomic analysis of tumor necrosis factor-alpha (TNF-α)-induced L6 myotube secretome reveals novel TNF-α-dependent myokines in diabetic skeletal muscle

Yoon, J. H., Song, P., Jang, J. H., Kim, D. K., Choi, S., Kim, J., Ghim, J., Kim, D., Park, S., Lee, H., Kwak, D., Yea, K., Hwang, D., Suh, P. G. & Ryu, S. H., 2 Dec 2011, In : Journal of Proteome Research. 10, 12, p. 5315-5325 11 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Titanium dioxide enrichment of sialic acid-containing glycopeptides

Palmisano, G., Lendal, S. E. & Larsen, M. R., 1 Dec 2011, Gel-Free Proteomics: Methods and Protocols. Gevaert, K. & Vandekerckhove, J. (eds.). p. 309-322 14 p. (Methods in Molecular Biology; vol. 753).

Research output: Chapter in Book/Report/Conference proceedingChapter

22 Citations (Scopus)
2010

Selective enrichment of sialic acid-containing glycopeptides using titanium dioxide chromatography with analysis by HILIC and mass spectrometry

Palmisano, G., Lendal, S. E., Engholm-Keller, K., Leth-Larsen, R., Parker, B. L. & Larsen, M. R., 1 Nov 2010, In : Nature Protocols. 5, 12, p. 1974-1982 9 p.

Research output: Contribution to journalArticle

166 Citations (Scopus)

Sequential Fe3O4/TiO2 enrichment for phosphopeptide analysis by liquid chromatography/tandem mass spectrometry

Choi, S., Kim, J., Cho, K., Park, G., Yoon, J. H., Park, S., Yoo, J. S., Ryu, S. H., Kim, Y. H. & Kim, J., 30 May 2010, In : Rapid Communications in Mass Spectrometry. 24, 10, p. 1467-1474 8 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Targeted label-free quantitative analysis of secretory proteins from adipocytes in response to oxidative stress

Choi, S., Kim, J., Yea, K., Suh, P. G., Kim, J. & Ryu, S. H., Jun 2010, In : Analytical Biochemistry. 401, 2, p. 196-202 7 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)
2009

Comparative proteome analysis using amine-reactive isobaric tagging reagents coupled with 2D LC/MS/MS in 3T3-L1 adipocytes following hypoxia or normoxia

Choi, S., Cho, K., Kim, J., Yea, K., Park, G., Lee, J., Ryu, S. H., Kim, J. & Kim, Y. H., 22 May 2009, In : Biochemical and Biophysical Research Communications. 383, 1, p. 135-140 6 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)
2007

Proteomic analysis of the cortisol-mediated stress response in THP-1 monocytes using DIGE technology

Billing, A. M., Fack, F., Renaut, J., Olinger, C. M., Schote, A. B., Turner, J. D. & Muller, C. P., 1 Nov 2007, In : Journal of Mass Spectrometry. 42, 11, p. 1433-1444 12 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)
2006

Ligand profiling and identification technology for searching bioactive ligands

Baek, M. C., Kim, S. J., Yea, K., Kim, Y., Lee, B. D., Kim, J., Lee, H. J., Kang, M. H., Choi, S. K., Kim, J. I., Lee, T. G., Suh, P. G. & Ryu, S. H., 1 Mar 2006, In : Proteomics. 6, 6, p. 1741-1749 9 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)