Computational Science & Engineering

Research Output 2003 2019

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Conference contribution
2019
1 Citation (Scopus)

DeepCrystal: A Deep Learning Framework for Sequence-based Protein Crystallization Prediction

Elbasir, A., Moovarkumudalvan, B., Kunji, K., Kolatkar, P., Bensmail, H. & Mall, R., 21 Jan 2019, Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018. Schmidt, H., Griol, D., Wang, H., Baumbach, J., Zheng, H., Callejas, Z., Hu, X., Dickerson, J. & Zhang, L. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 2747-2749 3 p. 8621202. (Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Crystallization
Learning
Proteins
Diffraction
Crystals

Deep reinforcement learning for traffic light optimization

Coskun, M., Baggag, A. & Chawla, S., 7 Feb 2019, Proceedings - 18th IEEE International Conference on Data Mining Workshops, ICDMW 2018. Yu, J., Li, Z., Tong, H. & Zhu, F. (eds.). IEEE Computer Society, p. 564-571 8 p. 8637414. (IEEE International Conference on Data Mining Workshops, ICDMW; vol. 2018-November).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Reinforcement learning
Telecommunication traffic
Travel time
Simulators
2018
4 Citations (Scopus)

A twitter tale of three hurricanes: Harvey, Irma, and Maria

Alam, F., Ofli, F., Imran, M. & Aupetit, M., 1 Jan 2018, Conference Proceedings - 15th International Conference on Information Systems for Crisis Response and Management, ISCRAM 2018. Tomaszewski, B. & Boersma, K. (eds.). Information Systems for Crisis Response and Management, ISCRAM, Vol. 2018-May. p. 553-572 20 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Hurricanes
Disasters
Learning algorithms
Computer vision
Artificial intelligence

ISaaC: Identifying structural relations in biological data with copula-based kernel dependency measures

Al Meer, H., Mall, R., Ullah, E., Megrez, N. & Bensmail, H., 1 Jan 2018, Bioinformatics and Biomedical Engineering - 6th International Work-Conference, IWBBIO 2018, Proceedings. Springer Verlag, p. 71-82 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10813 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Copula
Genes
kernel
Reverse engineering
Reverse Engineering
2 Citations (Scopus)

Microbiomarkers Discovery in Inflammatory Bowel Diseases using Network-Based Feature Selection

Abbas, M., Le, T., Bensmail, H., Honavar, V. & El-Manzalawy, Y., 15 Aug 2018, ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 172-177 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomarkers
Inflammatory Bowel Diseases
Feature extraction
Metagenomics
Phenotype
2 Citations (Scopus)

VisCoDeR: A tool for visually comparing dimensionality reduction algorithms

Cutura, R., Holzer, S., Aupetit, M. & Sedlmair, M., 1 Jan 2018, ESANN 2018 - Proceedings, European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning. i6doc.com publication, p. 105-110 6 p. (ESANN 2018 - Proceedings, European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Visualization

Visualizing geo-demographic urban data

Araujo, M., Aupetit, M., Mejova, Y. & Weber, I., 30 Oct 2018, CSCW 2018 Companion - Companion of the 2018 ACM Conference on Computer Supported Cooperative Work and Social Computing. Association for Computing Machinery, p. 45-48 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Visualization
Marketing
Data visualization
Application programming interfaces (API)
2017

Advanced computation of sparse precision matrices for big data

Baggag, A., Bensmail, H. & Srivastava, J., 1 Jan 2017, Advances in Knowledge Discovery and Data Mining - 21st Pacific-Asia Conference, PAKDD 2017, Proceedings. Springer Verlag, p. 27-38 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10235 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Covariance matrix
Method of multipliers
Alternating Direction Method
Positive Definiteness
Stopping Criterion
1 Citation (Scopus)

An adaptive refinement for community detection methods for disease module identification in biological networks using novel metric based on connectivity, conductance & modularity

Mall, R., Ullah, E., Kunji, K., Bensmail, H. & Ceccarelli, M., 15 Dec 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January. p. 2282-2284 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Benchmarking
Genes
Genome-Wide Association Study
Merging
Biomedical Research
3 Citations (Scopus)

Challenging language-Dependent segmentation for Arabic: An application to machine translation and part-of-Speech tagging

Sajjad, H., Dalvi, F., Durrani, N., Abdelali, A., Belinkov, Y. & Vogel, S., 1 Jan 2017, ACL 2017 - 55th Annual Meeting of the Association for Computational Linguistics, Proceedings of the Conference (Short Papers). Association for Computational Linguistics (ACL), Vol. 2. p. 601-607 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Convolution
Neural networks
language
dialect
neural network
1 Citation (Scopus)

Differential community detection in paired biological networks

Mall, R., D'Angelo, F., Ullah, E., Bensmail, H., Kunji, K. & Ceccarelli, M., 20 Aug 2017, ACM-BCB 2017 - Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 330-339 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Methylation
Molecular interactions
Electric wiring
Gene expression

Identification of cancer drug sensitivity biomarkers

Ullah, E., Mall, R., Bensmail, H., Rawi, R., Shama, S., Muftah, N. A. & Thmpson, I. R., 15 Dec 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January. p. 2322-2324 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomarkers
Cells
Gene expression
Pharmaceutical Preparations
Medicine
9 Citations (Scopus)

In-memory distributed matrix computation processing & optimization

Yu, Y., Tang, M., Aref, W. G., Malluhi, Q. M., Abbas, M. & Ouzzani, M., 16 May 2017, Proceedings - 2017 IEEE 33rd International Conference on Data Engineering, ICDE 2017. IEEE Computer Society, p. 1047-1058 12 p. 7930046

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data storage equipment
Processing
Costs
Competitive intelligence
Communication

Metabolomic Data Profiling for Diabetes Research in Qatar

Mall, R., Berti-Equille, L. & Bensmail, H., 12 Jan 2017, Proceedings - 27th International Workshop on Database and Expert Systems Applications, DEXA 2016. Institute of Electrical and Electronics Engineers Inc., p. 39-43 5 p. 7816621

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medical problems
Biomarkers
Metabolites
Nuclear magnetic resonance spectroscopy
Nuclear magnetic resonance

On the role of political affiliation in human perception the case of Delhi OddEven experiment

Zanouda, T., Abbar, S., Berti-Equille, L., Shah, K., Baggag, A., Chawla, S. & Srivastava, J., 1 Jan 2017, Social Informatics - 9th International Conference, SocInfo 2017, Proceedings. Springer Verlag, p. 74-88 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10540 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Human Perception
Experiment
Experiments
India
Curbs
1 Citation (Scopus)

Parallelizing partial digest problem on multicore system

Bahig, H. M., Abbas, M. & Mohie-Eldin, M. M., 1 Jan 2017, Bioinformatics and Biomedical Engineering - 5th International Work-Conference, IWBBIO 2017, Proceedings. Springer Verlag, p. 95-104 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10209 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sequential Algorithm
Partial
Exponential time
Exact Algorithms
Parallel Algorithms

Predictive and comparative network analysis of the gut microbiota in type 2 diabetes

Abbas, M. & El-Manzalawy, Y., 20 Aug 2017, ACM-BCB 2017 - Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 313-320 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Taxonomies
Medical problems
Electric network analysis
Type 2 Diabetes Mellitus
Metagenome
1 Citation (Scopus)

QCRI live speech translation system

Dalvi, F., Zhang, Y., Khurana, S., Durrani, N., Sajjad, H., Abdelali, A., Mubarak, H., Ali, A. & Vogel, S., 1 Jan 2017, 15th Conference of the European Chapter of the Association for Computational Linguistics, EACL 2017 - Proceedings of the Software Demonstrations. Association for Computational Linguistics (ACL), p. 61-64 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

broadcast
neural network
Translation System
Machine Translation System
World Wide Web

The SUMMA platform prototype

Liepins, R., Germann, U., Barzdins, G., Birch, A., Renals, S., Weber, S., Van Der Kreeft, P., Bourlard, H., Prieto, J., Klejch, O., Bell, P., Lazaridis, A., Mendes, A., Riedel, S., Almeida, M. S. C., Balage, P., Cohen, S., Dwojak, T., Garner, P., Giefer, A. & 26 others, Junczys-Dowmunt, M., Imran, H., Nogueira, D., Ali, A., Miranda, S., Popescu-Belis, A., Werlen, L. M., Papasarantopoulos, N., Obamuyide, A., Jones, C., Dalvi, F., Vlachos, A., Wang, Y., Tong, S., Sennrich, R., Pappas, N., Narayan, S., Damonte, M., Durrani, N., Khurana, S., Abdelali, A., Sajjad, H., Vogel, S., Sheppey, D., Hernon, C. & Mitchell, J., 1 Jan 2017, 15th Conference of the European Chapter of the Association for Computational Linguistics, EACL 2017 - Proceedings of the Software Demonstrations. Association for Computational Linguistics (ACL), p. 116-119 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

broadcast
semantics
monitoring
language
Prototype
3 Citations (Scopus)

Visualization of Wearable Data and Biometrics for Analysis and Recommendations in Childhood Obesity

Aupetit, M., Fernandez, L., Singh, M. & Srivastava, J., 10 Nov 2017, Proceedings - 2017 IEEE 30th International Symposium on Computer-Based Medical Systems, CBMS 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-June. p. 678-679 2 p. 8104277

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pediatric Obesity
Health Behavior
Biometrics
Visualization
Obesity
5 Citations (Scopus)

Visualizing health awareness in the middle east

Araujo, M., Mejova, Y., Aupetit, M. & Weber, I., 1 Jan 2017, Proceedings of the 11th International Conference on Web and Social Media, ICWSM 2017. AAAI press, p. 725-726 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Health
Public health
Application programming interfaces (API)
Marketing
Planning
20 Citations (Scopus)

What do neural machine translation models learn about morphology?

Belinkov, Y., Durrani, N., Dalvi, F., Sajjad, H. & Glass, J., 1 Jan 2017, ACL 2017 - 55th Annual Meeting of the Association for Computational Linguistics, Proceedings of the Conference (Long Papers). Association for Computational Linguistics (ACL), Vol. 1. p. 861-872 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

language
Machine Translation
ability
evaluation
learning
2016
1 Citation (Scopus)

A design study to identify inconsistencies in kinship information: The case of the 1000 Genomes project

Aupetit, M., Ullah, E., Rawi, R. & Bensmail, H., 4 May 2016, 2016 IEEE Pacific Visualization Symposium, PacificVis 2016 - Proceedings. IEEE Computer Society, Vol. 2016-May. p. 254-258 5 p. 7465281

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Data visualization
1 Citation (Scopus)

Denoised Kernel Spectral data Clustering

Mall, R., Bensmail, H., Langone, R., Varon, C. & Suykens, J. A. K., 31 Oct 2016, 2016 International Joint Conference on Neural Networks, IJCNN 2016. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-October. p. 3709-3716 8 p. 7727677

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Principal component analysis
Heuristic methods
Bandwidth
2 Citations (Scopus)

Fast in-memory spectral clustering using a fixed-size approach

Langone, R., Mall, R., Jumutc, V. & Suykens, J. A. K., 1 Jan 2016, ESANN 2016 - 24th European Symposium on Artificial Neural Networks. i6doc.com publication, p. 557-562 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data storage equipment
Computational efficiency
Clustering algorithms
14 Citations (Scopus)

SepMe: 2002 New visual separation measures

Aupetit, M. & Sedlmair, M., 4 May 2016, 2016 IEEE Pacific Visualization Symposium, PacificVis 2016 - Proceedings. IEEE Computer Society, Vol. 2016-May. p. 1-8 8 p. 7465244

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Parameterization
Learning systems
Color
14 Citations (Scopus)

Supervised Cross-Modal Factor Analysis for Multiple Modal Data Classification

Wang, J., Zhou, Y., Duan, K., Wang, J. J. Y. & Bensmail, H., 12 Jan 2016, Proceedings - 2015 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2015. Institute of Electrical and Electronics Engineers Inc., p. 1882-1888 7 p. 7379461

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Factor analysis
Labels
Hinges
Objective function
Experiments
7 Citations (Scopus)

Visualization of actionable knowledge to mitigate DRDoS attacks

Aupetit, M., Zhauniarovich, Y., Vasiliadis, G., Dacier, M. & Boshmaf, Y., 8 Nov 2016, 2016 IEEE Symposium on Visualization for Cyber Security, VizSec 2016. Institute of Electrical and Electronics Engineers Inc., 7739577

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Internet service providers
Denial of Service
Visualization
Attack
Traffic
2015
4 Citations (Scopus)

A multidimensional brush for scatterplot data analytics

Aupetit, M., Heulot, N. & Fekete, J. D., 13 Feb 2015, 2014 IEEE Conference on Visual Analytics Science and Technology, VAST 2014 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 221-222 2 p. 7042500

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brushes

Evaluation of combined genome assemblies: A case study with fungal genomes

Abbas, M., Balakrishnan, P. & Malluhi, Q. M., 1 Jan 2015, Bioinformatics and Biomedical Engineering - 3rd International Conference, IWBBIO 2015, Proceedings. Springer Verlag, p. 333-344 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9044).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genome
Genes
Evaluation
Output
Sequencing

Exploratory digraph navigation using A

De Chamisso, F. M., Soulier, L. & Aupetit, M., 2015, IJCAI International Joint Conference on Artificial Intelligence. International Joint Conferences on Artificial Intelligence, Vol. 2015-January. p. 1624-1630 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Navigation
Graph theory
23 Citations (Scopus)

Infer Gene Regulatory Networks from Time Series Data with Probabilistic Model Checking

Ruvo, G. D., Nardone, V., Santone, A., Ceccarelli, M. & Cerulo, L., 24 Jul 2015, Proceedings - 3rd FME Workshop on Formal Methods in Software Engineering, Formalise 2015. Institute of Electrical and Electronics Engineers Inc., p. 26-32 7 p. 7166694

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Model checking
Time series
Genes
Formal methods
Chemical activation

Residue-residue contact prediction in the HIV-1 envelope glycoprotein complex

Rawi, R., Kunji, K., Haoudi, A. & Bensmail, H., 16 Dec 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 1709-1711 3 p. 7359933

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Glycoproteins
env Gene Products
HIV-1
Proteins
Fusion reactions
2014
3 Citations (Scopus)

COFADMM: A computational features selection with alternating Direction Method of Multipliers

El Anbari, M., Alam, S. & Bensmail, H., 2014, Procedia Computer Science. Elsevier, Vol. 29. p. 821-830 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Feature extraction
Convex optimization
Combinatorial optimization
Distributed computer systems
Explosions

Computational neuro-modeling of visual memory: Multimodal imaging and analysis

El Anbari, M., Nemmour, N., Bouhali, O., Rawi, R., Sheharyar, A. & Bensmail, H., 1 Jan 2014, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 8609 LNAI. p. 21-32 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8609 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Imaging
Imaging techniques
Data storage equipment
Functional Magnetic Resonance Imaging
Overfitting
3 Citations (Scopus)

Domain transfer nonnegative matrix factorization

Wang, J. J. Y., Sun, Y. & Bensmail, H., 1 Jan 2014, Proceedings of the International Joint Conference on Neural Networks. Institute of Electrical and Electronics Engineers Inc., p. 3605-3612 8 p. 6889428

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Factorization
Classifiers
Vector spaces
Labels
Learning algorithms
7 Citations (Scopus)

Sanity check for class-coloring-based evaluation of dimension reduction techniques

Aupetit, M., 10 Nov 2014, ACM International Conference Proceeding Series. Association for Computing Machinery, Vol. 10-November-2015. p. 134-141 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Coloring
Visualization
3 Citations (Scopus)

Scalable multi-core implementation for motif finding problem

Abbas, M., Malluhi, Q. M. & Balakrishnan, P., 1 Jan 2014, Proceedings - IEEE 13th International Symposium on Parallel and Distributed Computing, ISPDC 2014. Institute of Electrical and Electronics Engineers Inc., p. 178-183 6 p. 6900217

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene expression
Scalability
Parallel algorithms
Data storage equipment
Experiments
2013
2 Citations (Scopus)

Cross-domain sparse coding

Wang, J. J. Y. & Bensmail, H., 11 Dec 2013, International Conference on Information and Knowledge Management, Proceedings. p. 1461-1464 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spam
Oil
Discrepancy
Experiment
1 Citation (Scopus)

Metflexo: An automated simulation of realistic H1-NMR spectra

Atieh, Z., Suhre, K. & Bensmail, H., 2013, Procedia Computer Science. Elsevier, Vol. 18. p. 1382-1391 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Metabolites
Nuclear magnetic resonance
Magnetic fields
Deconvolution
Biological systems
2012

RAFNI: Robust analysis of functional neuroimages with non-normal α-stable error

Bensmail, H., Anjum, S., Bouhali, O. & El Anbari, M., 19 Nov 2012, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). PART 1 ed. Vol. 7663 LNCS. p. 624-631 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7663 LNCS, no. PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Functional Magnetic Resonance Imaging
Stable Distribution
Neuroscience
Neuroimaging
Fat Tails
2006
5 Citations (Scopus)

Visualizing the trustworthiness of a projection

Aupetit, M., 1 Jan 2006, ESANN 2006 Proceedings - European Symposium on Artificial Neural Networks. d-side publication, p. 271-276 6 p. (ESANN 2006 Proceedings - European Symposium on Artificial Neural Networks).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Principal component analysis
Stretching
Compaction
Visualization
Color